Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.46979 * 2 1 4 4 H 1.09004 * 109.46949 * 175.91466 * 3 2 1 5 5 C 1.50700 * 109.47332 * 295.92116 * 3 2 1 6 6 H 1.07993 * 120.00169 * 114.74341 * 5 3 2 7 7 C 1.37880 * 119.99795 * 294.73986 * 5 3 2 8 8 N 1.31515 * 119.99888 * 350.25697 * 7 5 3 9 9 Si 1.86799 * 119.99898 * 170.25841 * 7 5 3 10 10 H 1.48502 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46933 * 119.99852 * 9 7 5 12 12 H 1.48493 * 109.47231 * 239.99912 * 9 7 5 13 13 N 1.46901 * 109.46923 * 55.92378 * 3 2 1 14 14 C 1.46958 * 111.00373 * 54.69578 * 13 3 2 15 15 C 1.53051 * 109.36291 * 183.18765 * 14 13 3 16 16 N 1.46955 * 109.36592 * 301.60051 * 15 14 13 17 17 C 1.46952 * 110.87903 * 59.32239 * 16 15 14 18 18 C 1.46955 * 110.99786 * 178.49835 * 13 3 2 19 19 H 1.09000 * 109.47036 * 185.21853 * 1 2 3 20 20 H 1.08996 * 109.46957 * 305.21890 * 1 2 3 21 21 H 1.08998 * 109.46767 * 65.22124 * 1 2 3 22 22 H 1.08998 * 109.46497 * 240.00471 * 2 1 3 23 23 H 1.08999 * 109.47313 * 120.00263 * 2 1 3 24 24 H 0.96996 * 119.99984 * 359.56785 * 8 7 5 25 25 H 1.08998 * 109.48527 * 303.15746 * 14 13 3 26 26 H 1.08993 * 109.48602 * 63.22195 * 14 13 3 27 27 H 1.08998 * 109.48374 * 181.62883 * 15 14 13 28 28 H 1.08996 * 109.50490 * 61.58114 * 15 14 13 29 29 H 1.00900 * 110.99758 * 295.45353 * 16 15 14 30 30 H 1.09006 * 109.48384 * 180.71354 * 17 16 15 31 31 H 1.08992 * 109.50847 * 60.66160 * 17 16 15 32 32 H 1.08995 * 109.48952 * 296.77331 * 18 13 3 33 33 H 1.08995 * 109.49151 * 56.82152 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1276 1.4434 0.0732 5 6 1.6220 2.1232 -1.2779 6 1 0.9287 2.9506 -1.2471 7 6 2.1246 1.6895 -2.4863 8 7 3.1077 0.8163 -2.5143 9 14 1.4093 2.3422 -4.0837 10 1 0.3213 3.3066 -3.7812 11 1 2.4746 3.0261 -4.8601 12 1 0.8639 1.2134 -4.8796 13 7 1.4716 2.1628 1.1472 14 6 1.7534 1.4565 2.4047 15 6 1.0786 2.1945 3.5634 16 7 1.5754 3.5765 3.6162 17 6 1.2936 4.2827 2.3586 18 6 1.9684 3.5448 1.1999 19 1 -0.3633 -1.0234 0.0935 20 1 -0.3633 0.5926 0.8395 21 1 -0.3633 0.4307 -0.9331 22 1 1.8933 -0.5138 -0.8900 23 1 1.8935 -0.5139 0.8899 24 1 3.4833 0.4821 -1.6848 25 1 1.3650 0.4398 2.3457 26 1 2.8301 1.4257 2.5711 27 1 1.3102 1.6887 4.5007 28 1 -0.0006 2.2015 3.4111 29 1 2.5612 3.5985 3.8301 30 1 1.6820 5.2995 2.4177 31 1 0.2169 4.3139 2.1921 32 1 3.0476 3.5377 1.3526 33 1 1.7371 4.0504 0.2625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034434709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = -1.616933 kcal Electronic energy + Delta-G solvation = -13617.809062 eV Core-core repulsion = 11484.963640 eV Total energy + Delta-G solvation = -2132.845422 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.76996 -35.42489 -32.26517 -31.06171 -30.10844 -26.47299 -24.32430 -23.32067 -22.43844 -20.31633 -19.22271 -16.82998 -15.68838 -14.68358 -14.40543 -14.09387 -13.93791 -13.72142 -13.17758 -12.71768 -12.23024 -11.59128 -11.54545 -11.22832 -10.91506 -10.79937 -10.77687 -10.56540 -10.13445 -10.12802 -9.96648 -9.78388 -8.51519 -8.38408 -8.06101 -7.29072 -6.36175 -4.04909 3.43189 3.46033 3.60255 4.47426 4.57261 4.78972 5.34780 5.51975 5.63058 5.63773 5.73047 5.76551 5.97605 6.12809 6.23651 6.29448 6.33663 6.44088 6.55271 6.61466 6.84994 7.01621 7.12349 7.22927 7.34390 7.43499 7.59275 7.88253 7.99731 8.35166 8.59229 8.86541 9.64305 11.00424 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043730 B = 0.011755 C = 0.010404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.140130 B = 2381.302117 C = 2690.597665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.205 3.795 4 H -0.014 1.014 5 C -0.579 4.579 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.517 5.517 14 C 0.011 3.989 15 C 0.061 3.939 16 N -0.690 5.690 17 C 0.058 3.942 18 C 0.030 3.970 19 H 0.019 0.981 20 H 0.052 0.948 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.021 0.979 24 H 0.269 0.731 25 H 0.078 0.922 26 H 0.016 0.984 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.332 0.668 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.015 0.985 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 2.487 8.054 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.098 3.902 4 H 0.003 0.997 5 C -0.617 4.617 6 H 0.075 0.925 7 C -0.184 4.184 8 N -0.550 5.550 9 Si 0.899 3.101 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.243 5.243 14 C -0.119 4.119 15 C -0.069 4.069 16 N -0.318 5.318 17 C -0.072 4.072 18 C -0.100 4.100 19 H 0.039 0.961 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.034 0.966 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.148 0.852 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.835 2.657 6.667 8.137 hybrid contribution 1.572 -0.494 1.079 1.970 sum -2.263 2.163 7.746 8.354 Atomic orbital electron populations 1.21453 0.96218 0.97769 1.02452 1.21636 0.96449 0.98237 0.98971 1.19388 0.91438 0.90620 0.88740 0.99699 1.21839 1.29873 1.18921 0.91082 0.92510 1.25730 0.94817 0.95737 1.02135 1.70747 1.22522 1.30346 1.31342 0.83534 0.75632 0.75907 0.75046 1.21410 1.21637 1.21309 1.62153 1.59169 1.01226 1.01708 1.22853 0.97159 0.99599 0.92310 1.22064 1.00549 0.87860 0.96426 1.60846 1.21494 1.15502 1.33935 1.22135 1.01537 0.96346 0.87176 1.22630 0.95569 0.91516 1.00317 0.96142 0.92925 0.92327 0.91747 0.96040 0.92006 0.90399 0.96619 0.91351 0.90443 0.85190 0.91219 0.90451 0.96690 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.32 37.16 0.35 -2.25 16 2 C -0.11 -2.67 4.84 -26.73 -0.13 -2.80 16 3 C 0.20 5.07 1.38 -68.87 -0.10 4.98 16 4 H -0.01 -0.40 7.44 -51.93 -0.39 -0.79 16 5 C -0.58 -15.69 6.72 -34.44 -0.23 -15.92 16 6 H 0.06 1.57 7.03 -52.49 -0.37 1.21 16 7 C 0.02 0.55 5.16 -17.82 -0.09 0.46 16 8 N -0.91 -27.01 12.95 55.43 0.72 -26.29 16 9 Si 1.07 25.08 29.91 -169.99 -5.09 20.00 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.52 -10.95 3.62 -227.88 -0.83 -11.78 16 14 C 0.01 0.20 4.89 -3.77 -0.02 0.18 16 15 C 0.06 0.93 6.72 -3.77 -0.03 0.90 16 16 N -0.69 -10.38 6.91 -113.64 -0.79 -11.16 16 17 C 0.06 0.93 6.72 -3.77 -0.03 0.90 16 18 C 0.03 0.58 5.39 -3.77 -0.02 0.56 16 19 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 20 H 0.05 1.09 6.86 -51.93 -0.36 0.73 16 21 H 0.06 1.35 7.52 -51.93 -0.39 0.96 16 22 H 0.06 1.66 6.45 -51.93 -0.33 1.33 16 23 H 0.02 0.45 6.51 -51.93 -0.34 0.12 16 24 H 0.27 7.98 6.20 -40.82 -0.25 7.73 16 25 H 0.08 1.42 5.77 -51.93 -0.30 1.12 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.33 4.66 8.89 -39.29 -0.35 4.31 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 1.93 6.57 -51.93 -0.34 1.59 16 LS Contribution 252.10 15.07 3.80 3.80 Total: -1.00 -28.69 252.10 -7.64 -36.33 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.17 Total: 2.09 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.29 Total: -12.98 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.89 Total: -49.24 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.69 -7.64 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034434709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.712 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds