Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.46979 * 2 1 4 4 H 1.09004 * 109.46949 * 175.91466 * 3 2 1 5 5 C 1.50700 * 109.47332 * 295.92116 * 3 2 1 6 6 H 1.07993 * 120.00169 * 114.74341 * 5 3 2 7 7 C 1.37880 * 119.99795 * 294.73986 * 5 3 2 8 8 N 1.31515 * 119.99888 * 350.25697 * 7 5 3 9 9 Si 1.86799 * 119.99898 * 170.25841 * 7 5 3 10 10 H 1.48502 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46933 * 119.99852 * 9 7 5 12 12 H 1.48493 * 109.47231 * 239.99912 * 9 7 5 13 13 N 1.46901 * 109.46923 * 55.92378 * 3 2 1 14 14 C 1.46958 * 111.00373 * 54.69578 * 13 3 2 15 15 C 1.53051 * 109.36291 * 183.18765 * 14 13 3 16 16 N 1.46955 * 109.36592 * 301.60051 * 15 14 13 17 17 C 1.46952 * 110.87903 * 59.32239 * 16 15 14 18 18 C 1.46955 * 110.99786 * 178.49835 * 13 3 2 19 19 H 1.09000 * 109.47036 * 185.21853 * 1 2 3 20 20 H 1.08996 * 109.46957 * 305.21890 * 1 2 3 21 21 H 1.08998 * 109.46767 * 65.22124 * 1 2 3 22 22 H 1.08998 * 109.46497 * 240.00471 * 2 1 3 23 23 H 1.08999 * 109.47313 * 120.00263 * 2 1 3 24 24 H 0.96996 * 119.99984 * 359.56785 * 8 7 5 25 25 H 1.08998 * 109.48527 * 303.15746 * 14 13 3 26 26 H 1.08993 * 109.48602 * 63.22195 * 14 13 3 27 27 H 1.08998 * 109.48374 * 181.62883 * 15 14 13 28 28 H 1.08996 * 109.50490 * 61.58114 * 15 14 13 29 29 H 1.00900 * 110.99758 * 295.45353 * 16 15 14 30 30 H 1.09006 * 109.48384 * 180.71354 * 17 16 15 31 31 H 1.08992 * 109.50847 * 60.66160 * 17 16 15 32 32 H 1.08995 * 109.48952 * 296.77331 * 18 13 3 33 33 H 1.08995 * 109.49151 * 56.82152 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1276 1.4434 0.0732 5 6 1.6220 2.1232 -1.2779 6 1 0.9287 2.9506 -1.2471 7 6 2.1246 1.6895 -2.4863 8 7 3.1077 0.8163 -2.5143 9 14 1.4093 2.3422 -4.0837 10 1 0.3213 3.3066 -3.7812 11 1 2.4746 3.0261 -4.8601 12 1 0.8639 1.2134 -4.8796 13 7 1.4716 2.1628 1.1472 14 6 1.7534 1.4565 2.4047 15 6 1.0786 2.1945 3.5634 16 7 1.5754 3.5765 3.6162 17 6 1.2936 4.2827 2.3586 18 6 1.9684 3.5448 1.1999 19 1 -0.3633 -1.0234 0.0935 20 1 -0.3633 0.5926 0.8395 21 1 -0.3633 0.4307 -0.9331 22 1 1.8933 -0.5138 -0.8900 23 1 1.8935 -0.5139 0.8899 24 1 3.4833 0.4821 -1.6848 25 1 1.3650 0.4398 2.3457 26 1 2.8301 1.4257 2.5711 27 1 1.3102 1.6887 4.5007 28 1 -0.0006 2.2015 3.4111 29 1 2.5612 3.5985 3.8301 30 1 1.6820 5.2995 2.4177 31 1 0.2169 4.3139 2.1921 32 1 3.0476 3.5377 1.3526 33 1 1.7371 4.0504 0.2625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034434709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = -22.230478 kcal Electronic energy + Delta-G solvation = -13618.702933 eV Core-core repulsion = 11484.963640 eV Total energy + Delta-G solvation = -2133.739292 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34168 -37.14531 -34.17251 -32.73413 -31.63754 -28.32356 -26.17498 -24.94801 -24.00763 -21.88636 -20.99061 -18.81391 -17.32818 -16.18319 -15.96396 -15.81177 -15.59498 -15.43054 -14.87117 -14.36742 -13.94767 -13.40269 -13.12043 -13.01649 -12.69220 -12.44657 -12.24728 -12.04337 -11.95313 -11.86895 -11.78830 -11.60768 -10.53761 -10.47083 -9.46125 -9.04057 -8.59122 -6.28083 1.51757 1.59532 1.76424 2.54786 3.08861 3.20096 3.38034 4.10756 4.15007 4.24551 4.27726 4.33317 4.43206 4.47595 4.64633 4.66328 4.72685 4.93503 5.00081 5.05954 5.11360 5.18791 5.28570 5.43629 5.64094 5.91533 5.95122 6.05075 6.39708 6.42758 6.49947 6.72386 7.48951 8.77084 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043730 B = 0.011755 C = 0.010404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.140130 B = 2381.302117 C = 2690.597665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C 0.208 3.792 4 H -0.057 1.057 5 C -0.578 4.578 6 H 0.048 0.952 7 C -0.028 4.028 8 N -0.938 5.938 9 Si 1.113 2.887 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.521 5.521 14 C 0.011 3.989 15 C 0.070 3.930 16 N -0.682 5.682 17 C 0.071 3.929 18 C 0.030 3.970 19 H 0.047 0.953 20 H 0.060 0.940 21 H 0.035 0.965 22 H 0.033 0.967 23 H 0.039 0.961 24 H 0.255 0.745 25 H 0.079 0.921 26 H 0.008 0.992 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.340 0.660 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.002 0.998 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 2.988 9.302 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C 0.100 3.900 4 H -0.039 1.039 5 C -0.617 4.617 6 H 0.066 0.934 7 C -0.226 4.226 8 N -0.575 5.575 9 Si 0.936 3.064 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.206 1.206 13 N -0.246 5.246 14 C -0.119 4.119 15 C -0.060 4.060 16 N -0.310 5.310 17 C -0.059 4.059 18 C -0.100 4.100 19 H 0.066 0.934 20 H 0.079 0.921 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.026 0.974 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.020 0.980 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.091 3.167 7.951 9.958 hybrid contribution 1.997 -0.644 0.766 2.234 sum -3.094 2.523 8.717 9.588 Atomic orbital electron populations 1.21333 0.94326 0.99509 1.01545 1.21515 0.97948 0.96913 0.98348 1.19227 0.89054 0.91976 0.89710 1.03938 1.22045 1.28904 1.18423 0.92291 0.93377 1.27044 0.94526 0.95475 1.05603 1.70867 1.24072 1.32051 1.30549 0.82976 0.75597 0.75966 0.71850 1.19652 1.21056 1.20622 1.62128 1.58620 1.01824 1.02018 1.22979 0.97126 0.99941 0.91876 1.22083 1.00091 0.87645 0.96229 1.60860 1.22223 1.15265 1.32660 1.22050 1.00988 0.97046 0.85807 1.22674 0.95246 0.91044 1.01013 0.93382 0.92055 0.94545 0.94787 0.94193 0.93466 0.90279 0.97408 0.88280 0.90471 0.84236 0.88817 0.90630 0.97973 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.32 71.99 0.67 -3.89 16 2 C -0.11 -5.09 4.84 30.60 0.15 -4.94 16 3 C 0.21 10.52 1.38 44.17 0.06 10.58 16 4 H -0.06 -3.29 7.44 -2.38 -0.02 -3.31 16 5 C -0.58 -31.96 6.72 25.60 0.17 -31.79 16 6 H 0.05 2.70 7.03 -2.91 -0.02 2.68 16 7 C -0.03 -1.61 5.16 84.66 0.44 -1.17 16 8 N -0.94 -57.00 12.95 21.45 0.28 -56.72 16 9 Si 1.11 50.64 29.91 68.60 2.05 52.70 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.52 -21.88 3.62 -874.89 -3.17 -25.05 16 14 C 0.01 0.37 4.89 86.31 0.42 0.79 16 15 C 0.07 1.89 6.72 86.31 0.58 2.47 16 16 N -0.68 -18.42 6.91 -513.45 -3.55 -21.97 16 17 C 0.07 2.12 6.72 86.31 0.58 2.70 16 18 C 0.03 1.19 5.39 86.31 0.47 1.65 16 19 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 20 H 0.06 2.41 6.86 -2.39 -0.02 2.40 16 21 H 0.04 1.65 7.52 -2.39 -0.02 1.63 16 22 H 0.03 1.78 6.45 -2.39 -0.02 1.77 16 23 H 0.04 1.69 6.51 -2.39 -0.02 1.67 16 24 H 0.26 15.84 6.20 -92.71 -0.58 15.26 16 25 H 0.08 2.72 5.77 -2.39 -0.01 2.70 16 26 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.34 8.53 8.89 -89.69 -0.80 7.74 16 30 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.07 16 33 H 0.06 2.82 6.57 -2.39 -0.02 2.80 16 Total: -1.00 -62.41 252.10 -0.37 -62.78 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.48 Total: 11.86 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 3.54 Total: -23.59 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -6.44 Total: -103.74 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.70 kcal Total: -62.41 -0.37 -62.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034434709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.551 kcal (2) G-P(sol) polarization free energy of solvation -62.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds