Wall clock time and date at job start Mon Mar 30 2020 02:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46899 * 109.47254 * 64.99771 * 3 2 1 14 14 C 1.46962 * 110.99987 * 56.20194 * 13 3 2 15 15 C 1.53048 * 109.36564 * 183.18760 * 14 13 3 16 16 N 1.46953 * 109.36405 * 301.59749 * 15 14 13 17 17 C 1.46963 * 110.88245 * 59.32220 * 16 15 14 18 18 C 1.46953 * 110.99973 * 179.97438 * 13 3 2 19 19 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 20 20 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 21 21 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 23 23 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 24 24 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 25 25 H 1.09003 * 109.48600 * 303.15611 * 14 13 3 26 26 H 1.09002 * 109.49050 * 63.21976 * 14 13 3 27 27 H 1.09003 * 109.48890 * 181.62831 * 15 14 13 28 28 H 1.09006 * 109.48863 * 61.56388 * 15 14 13 29 29 H 1.00893 * 111.00341 * 295.45362 * 16 15 14 30 30 H 1.08994 * 109.49094 * 180.71279 * 17 16 15 31 31 H 1.08998 * 109.48554 * 60.64459 * 17 16 15 32 32 H 1.09006 * 109.48864 * 296.77965 * 18 13 3 33 33 H 1.08994 * 109.48874 * 56.82499 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6514 2.0993 1.2552 14 6 2.1450 1.3478 2.4177 15 6 1.6531 2.0190 3.7021 16 7 2.1272 3.4095 3.7376 17 6 1.6336 4.1611 2.5752 18 6 2.1260 3.4896 1.2909 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 3.8292 -0.0607 -2.9502 25 1 1.7704 0.3250 2.3753 26 1 3.2350 1.3368 2.4075 27 1 2.0420 1.4800 4.5660 28 1 0.5634 2.0056 3.7250 29 1 3.1340 3.4470 3.7914 30 1 2.0083 5.1837 2.6175 31 1 0.5437 4.1720 2.5854 32 1 3.2158 3.5026 1.2682 33 1 1.7378 4.0287 0.4268 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034434712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:21 Heat of formation + Delta-G solvation = 0.021274 kcal Electronic energy + Delta-G solvation = -13610.612771 eV Core-core repulsion = 11477.838387 eV Total energy + Delta-G solvation = -2132.774384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.60956 -35.07894 -32.11560 -30.98835 -30.07715 -26.82127 -24.39774 -22.91942 -22.33917 -20.17716 -19.00419 -16.52170 -15.56701 -14.73231 -14.27573 -14.11546 -13.86642 -13.55682 -12.85473 -12.68426 -11.96385 -11.59187 -11.30427 -11.22783 -11.04854 -10.84780 -10.59463 -10.57375 -10.47408 -9.90852 -9.71744 -9.46958 -9.13874 -8.39520 -7.94627 -7.13967 -6.02124 -4.16192 3.21922 3.30794 3.33441 4.35622 4.71333 5.00426 5.21359 5.71567 5.78157 5.81693 5.94951 5.99971 6.12315 6.29304 6.40401 6.43754 6.54304 6.64751 6.71881 6.80102 7.05289 7.16598 7.27535 7.39515 7.58717 7.70447 7.74012 7.94457 8.12069 8.30002 8.42808 8.93695 9.51348 10.96566 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033513 B = 0.013385 C = 0.010914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.303064 B = 2091.451973 C = 2564.867505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.212 3.788 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.021 3.979 15 C 0.057 3.943 16 N -0.690 5.690 17 C 0.058 3.942 18 C 0.026 3.974 19 H 0.046 0.954 20 H 0.039 0.961 21 H 0.026 0.974 22 H 0.092 0.908 23 H 0.033 0.967 24 H 0.261 0.739 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.333 0.667 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 2.627 6.802 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.106 3.894 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.109 4.109 15 C -0.073 4.073 16 N -0.318 5.318 17 C -0.072 4.072 18 C -0.105 4.105 19 H 0.065 0.935 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.111 0.889 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.410 2.763 7.070 8.322 hybrid contribution 2.608 -0.503 -1.097 2.874 sum -0.802 2.260 5.973 6.436 Atomic orbital electron populations 1.21713 0.98762 0.98458 1.00629 1.21657 0.92340 0.99227 1.02033 1.19298 0.93028 0.91104 0.85961 0.94380 1.21734 0.92887 1.38041 1.05426 0.92816 1.24914 0.97844 0.95019 0.95689 1.69881 1.34700 1.38318 1.09399 0.86623 0.86176 0.77741 0.77958 1.20034 1.20966 1.20966 1.62615 1.58080 1.00985 1.03754 1.22660 0.98104 0.98704 0.91399 1.22121 1.00747 0.88032 0.96355 1.60867 1.15552 1.13385 1.42030 1.22111 1.00651 0.96158 0.88264 1.22573 0.98442 0.91569 0.97872 0.93454 0.94134 0.95533 0.88932 0.94786 0.92914 0.90720 0.94773 0.91564 0.90945 0.85044 0.91508 0.90927 0.94480 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.70 4.93 -26.73 -0.13 -2.83 16 3 C 0.21 5.23 1.82 -68.87 -0.13 5.11 16 4 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.54 -14.45 7.12 -34.44 -0.25 -14.69 16 6 H 0.05 1.46 5.80 -52.49 -0.30 1.15 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.83 11.29 55.43 0.63 -24.21 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -11.16 4.19 -227.87 -0.96 -12.11 16 14 C 0.02 0.41 4.92 -3.77 -0.02 0.39 16 15 C 0.06 0.92 6.72 -3.77 -0.03 0.90 16 16 N -0.69 -10.84 6.91 -113.63 -0.79 -11.63 16 17 C 0.06 0.93 6.72 -3.76 -0.03 0.90 16 18 C 0.03 0.50 5.24 -3.76 -0.02 0.48 16 19 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 20 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 23 H 0.03 0.79 6.00 -51.93 -0.31 0.47 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.07 1.47 5.95 -51.93 -0.31 1.16 16 26 H 0.03 0.73 6.81 -51.93 -0.35 0.37 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.33 5.06 8.89 -39.30 -0.35 4.71 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.79 6.58 -51.93 -0.34 0.45 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 253.01 15.07 3.81 3.81 Total: -1.00 -27.28 253.01 -7.84 -35.12 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.20 Total: 3.38 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.32 Total: -10.46 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -1.11 Total: -47.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.28 -7.84 -35.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034434712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.143 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds