Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47065 * 2 1 4 4 C 1.50699 * 109.46967 * 119.99813 * 2 1 3 5 5 H 1.07996 * 120.00352 * 114.68345 * 4 2 1 6 6 C 1.37877 * 120.00069 * 294.68035 * 4 2 1 7 7 N 1.31514 * 120.00094 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99922 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47348 * 89.99492 * 8 6 4 10 10 H 1.48503 * 109.46921 * 209.99966 * 8 6 4 11 11 H 1.48505 * 109.47091 * 329.99545 * 8 6 4 12 12 N 1.46894 * 109.47170 * 239.99631 * 2 1 3 13 13 C 1.46964 * 111.00157 * 172.41281 * 12 2 1 14 14 C 1.53050 * 109.36553 * 183.18805 * 13 12 2 15 15 N 1.46953 * 109.36516 * 301.60115 * 14 13 12 16 16 C 1.46899 * 110.99873 * 183.19220 * 15 14 13 17 17 C 1.46954 * 110.88231 * 59.31810 * 15 14 13 18 18 C 1.46951 * 111.00210 * 296.21135 * 12 2 1 19 19 H 1.09001 * 109.47432 * 300.00390 * 1 2 3 20 20 H 1.09006 * 109.47296 * 60.00247 * 1 2 3 21 21 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 22 22 H 0.97003 * 119.99677 * 180.02562 * 7 6 4 23 23 H 1.09001 * 109.48313 * 63.22276 * 13 12 2 24 24 H 1.08995 * 109.50450 * 303.16938 * 13 12 2 25 25 H 1.09002 * 109.48838 * 181.63301 * 14 13 12 26 26 H 1.08999 * 109.48619 * 61.56854 * 14 13 12 27 27 H 1.08996 * 109.47632 * 59.99671 * 16 15 14 28 28 H 1.08997 * 109.46837 * 299.99682 * 16 15 14 29 29 H 1.09007 * 109.47128 * 179.97438 * 16 15 14 30 30 H 1.09006 * 109.48727 * 60.64563 * 17 15 14 31 31 H 1.09001 * 109.48928 * 180.71044 * 17 15 14 32 32 H 1.08995 * 109.49361 * 296.78344 * 18 12 2 33 33 H 1.09003 * 109.48797 * 56.82767 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5805 -1.6358 1.1338 6 6 1.7920 -0.1788 2.4798 7 7 2.2299 -0.7990 3.5536 8 14 0.8431 1.4216 2.6471 9 1 -0.6074 1.1270 2.7665 10 1 1.3029 2.1451 3.8597 11 1 1.0798 2.2651 1.4480 12 7 2.0196 -0.6925 -1.1993 13 6 3.4774 -0.5573 -1.3274 14 6 3.9366 -1.2224 -2.6271 15 7 3.5408 -2.6376 -2.6165 16 6 4.0305 -3.3301 -3.8159 17 6 2.0831 -2.7728 -2.4885 18 6 1.6239 -2.1077 -1.1888 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 2.0605 -0.4251 4.4326 23 1 3.9632 -1.0410 -0.4799 24 1 3.7447 0.4992 -1.3453 25 1 5.0210 -1.1487 -2.7099 26 1 3.4718 -0.7211 -3.4760 27 1 5.1184 -3.2717 -3.8505 28 1 3.6129 -2.8570 -4.7045 29 1 3.7240 -4.3757 -3.7823 30 1 1.5972 -2.2891 -3.3359 31 1 1.8161 -3.8295 -2.4704 32 1 2.0886 -2.6090 -0.3398 33 1 0.5395 -2.1815 -1.1056 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = 16.863706 kcal Electronic energy + Delta-G solvation = -13478.436659 eV Core-core repulsion = 11346.392618 eV Total energy + Delta-G solvation = -2132.044041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.73220 -35.61753 -32.39401 -30.56863 -30.10713 -26.89068 -25.02642 -23.31007 -22.82873 -20.18724 -18.95332 -16.57196 -15.74961 -14.67995 -14.51852 -14.37498 -14.19558 -13.77006 -12.89948 -12.66436 -12.18174 -12.07099 -11.91874 -11.70512 -11.24553 -10.99074 -10.66697 -10.48386 -10.35679 -9.91873 -9.83606 -9.55632 -9.25611 -8.56681 -8.01987 -7.14269 -6.08082 -4.08605 3.27314 3.37476 3.39400 4.28816 4.40113 4.93640 5.24127 5.34092 5.42250 5.60903 5.65638 5.90184 5.92363 5.97347 5.99249 6.13866 6.26116 6.43441 6.46959 6.66116 6.68372 6.83436 6.91517 7.08382 7.20636 7.37462 7.41170 7.60401 8.12863 8.17241 8.49574 8.95765 9.55180 11.04750 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057329 B = 0.010308 C = 0.009963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.289526 B = 2715.699949 C = 2809.771905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.172 3.828 3 H 0.039 0.961 4 C -0.542 4.542 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.899 5.899 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.264 1.264 12 N -0.532 5.532 13 C 0.062 3.938 14 C 0.060 3.940 15 N -0.543 5.543 16 C 0.027 3.973 17 C 0.059 3.941 18 C 0.059 3.941 19 H 0.040 0.960 20 H 0.033 0.967 21 H 0.050 0.950 22 H 0.263 0.737 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -1.189 -11.622 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.064 3.936 3 H 0.057 0.943 4 C -0.580 4.580 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.537 5.537 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.189 1.189 12 N -0.256 5.256 13 C -0.067 4.067 14 C -0.068 4.068 15 N -0.268 5.268 16 C -0.121 4.121 17 C -0.069 4.069 18 C -0.070 4.070 19 H 0.059 0.941 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.441 -1.177 -11.426 11.495 hybrid contribution -0.523 0.790 0.323 1.001 sum -0.082 -0.387 -11.103 11.111 Atomic orbital electron populations 1.22088 0.98579 1.00634 0.98545 1.19715 0.91529 0.94882 0.87443 0.94348 1.21635 1.36251 1.10263 0.89874 0.90331 1.24981 0.95155 0.96931 0.95859 1.69925 1.46239 1.39440 0.98058 0.86883 0.80094 0.84410 0.77331 1.20475 1.22296 1.18924 1.62573 1.10902 1.11945 1.40220 1.21943 0.89680 0.99290 0.95776 1.22203 0.99308 0.87216 0.98082 1.62112 1.13203 1.13561 1.37951 1.22317 1.00364 0.98786 0.90668 1.22238 0.86747 0.99685 0.98277 1.22030 0.99938 0.89493 0.95515 0.94091 0.94765 0.93050 0.92729 0.92845 0.91477 0.91250 0.94925 0.91806 0.96205 0.91811 0.94994 0.91298 0.92618 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.65 37.16 0.32 -2.78 16 2 C 0.17 4.09 1.92 -68.87 -0.13 3.96 16 3 H 0.04 0.95 6.75 -51.93 -0.35 0.60 16 4 C -0.54 -14.98 7.67 -34.44 -0.26 -15.25 16 5 H 0.08 2.39 6.06 -52.49 -0.32 2.08 16 6 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 8 Si 0.88 21.84 24.65 -169.99 -4.19 17.64 16 9 H -0.28 -6.72 6.88 56.52 0.39 -6.33 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.28 6.39 56.52 0.36 -5.92 16 12 N -0.53 -11.25 4.68 -227.88 -1.07 -12.32 16 13 C 0.06 1.23 5.36 -3.76 -0.02 1.20 16 14 C 0.06 0.99 5.62 -3.77 -0.02 0.97 16 15 N -0.54 -8.93 4.97 -242.76 -1.21 -10.13 16 16 C 0.03 0.35 9.60 60.06 0.58 0.92 16 17 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 18 C 0.06 1.17 4.96 -3.77 -0.02 1.15 16 19 H 0.04 0.93 3.98 -51.93 -0.21 0.72 16 20 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 1.10 6.42 -51.93 -0.33 0.76 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.05 1.21 7.17 -51.93 -0.37 0.84 16 24 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 32 H 0.06 1.28 6.28 -51.93 -0.33 0.96 16 33 H 0.07 1.39 6.25 -51.93 -0.32 1.07 16 LS Contribution 247.93 15.07 3.74 3.74 Total: -1.00 -29.77 247.93 -6.85 -36.62 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.22 Total: -2.00 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 0.32 Total: -6.86 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -1.50 Total: -49.15 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.19 Total: 17.64 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.77 -6.85 -36.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.488 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds