Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47065 * 2 1 4 4 C 1.50699 * 109.46967 * 119.99813 * 2 1 3 5 5 H 1.07996 * 120.00352 * 114.68345 * 4 2 1 6 6 C 1.37877 * 120.00069 * 294.68035 * 4 2 1 7 7 N 1.31514 * 120.00094 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99922 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47348 * 89.99492 * 8 6 4 10 10 H 1.48503 * 109.46921 * 209.99966 * 8 6 4 11 11 H 1.48505 * 109.47091 * 329.99545 * 8 6 4 12 12 N 1.46894 * 109.47170 * 239.99631 * 2 1 3 13 13 C 1.46964 * 111.00157 * 172.41281 * 12 2 1 14 14 C 1.53050 * 109.36553 * 183.18805 * 13 12 2 15 15 N 1.46953 * 109.36516 * 301.60115 * 14 13 12 16 16 C 1.46899 * 110.99873 * 183.19220 * 15 14 13 17 17 C 1.46954 * 110.88231 * 59.31810 * 15 14 13 18 18 C 1.46951 * 111.00210 * 296.21135 * 12 2 1 19 19 H 1.09001 * 109.47432 * 300.00390 * 1 2 3 20 20 H 1.09006 * 109.47296 * 60.00247 * 1 2 3 21 21 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 22 22 H 0.97003 * 119.99677 * 180.02562 * 7 6 4 23 23 H 1.09001 * 109.48313 * 63.22276 * 13 12 2 24 24 H 1.08995 * 109.50450 * 303.16938 * 13 12 2 25 25 H 1.09002 * 109.48838 * 181.63301 * 14 13 12 26 26 H 1.08999 * 109.48619 * 61.56854 * 14 13 12 27 27 H 1.08996 * 109.47632 * 59.99671 * 16 15 14 28 28 H 1.08997 * 109.46837 * 299.99682 * 16 15 14 29 29 H 1.09007 * 109.47128 * 179.97438 * 16 15 14 30 30 H 1.09006 * 109.48727 * 60.64563 * 17 15 14 31 31 H 1.09001 * 109.48928 * 180.71044 * 17 15 14 32 32 H 1.08995 * 109.49361 * 296.78344 * 18 12 2 33 33 H 1.09003 * 109.48797 * 56.82767 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5805 -1.6358 1.1338 6 6 1.7920 -0.1788 2.4798 7 7 2.2299 -0.7990 3.5536 8 14 0.8431 1.4216 2.6471 9 1 -0.6074 1.1270 2.7665 10 1 1.3029 2.1451 3.8597 11 1 1.0798 2.2651 1.4480 12 7 2.0196 -0.6925 -1.1993 13 6 3.4774 -0.5573 -1.3274 14 6 3.9366 -1.2224 -2.6271 15 7 3.5408 -2.6376 -2.6165 16 6 4.0305 -3.3301 -3.8159 17 6 2.0831 -2.7728 -2.4885 18 6 1.6239 -2.1077 -1.1888 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 2.0605 -0.4251 4.4326 23 1 3.9632 -1.0410 -0.4799 24 1 3.7447 0.4992 -1.3453 25 1 5.0210 -1.1487 -2.7099 26 1 3.4718 -0.7211 -3.4760 27 1 5.1184 -3.2717 -3.8505 28 1 3.6129 -2.8570 -4.7045 29 1 3.7240 -4.3757 -3.7823 30 1 1.5972 -2.2891 -3.3359 31 1 1.8161 -3.8295 -2.4704 32 1 2.0886 -2.6090 -0.3398 33 1 0.5395 -2.1815 -1.1056 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -6.631349 kcal Electronic energy + Delta-G solvation = -13479.455481 eV Core-core repulsion = 11346.392618 eV Total energy + Delta-G solvation = -2133.062864 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25122 -37.20371 -34.43559 -32.23877 -31.67218 -28.24846 -27.11247 -24.74024 -24.28302 -21.89982 -20.66349 -18.59851 -17.41869 -16.28962 -16.02261 -15.80915 -15.70137 -15.41646 -14.62507 -14.49568 -13.99152 -13.54058 -13.30665 -13.14066 -12.92537 -12.56853 -12.30570 -12.12334 -12.03745 -11.63098 -11.60542 -11.33600 -11.23373 -10.74222 -9.25560 -8.95361 -8.29982 -6.34854 1.31272 1.35859 1.46374 2.32036 3.05204 3.07199 3.27920 4.06188 4.17651 4.25528 4.45375 4.48264 4.60961 4.66671 4.71884 4.72248 4.79637 4.85238 4.92630 5.03155 5.05364 5.15734 5.24598 5.26228 5.44748 5.56650 6.09274 6.12095 6.25457 6.39824 6.46288 6.73586 7.32951 8.86625 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057329 B = 0.010308 C = 0.009963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.289526 B = 2715.699949 C = 2809.771905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.172 3.828 3 H 0.034 0.966 4 C -0.535 4.535 5 H 0.033 0.967 6 C 0.013 3.987 7 N -0.950 5.950 8 Si 0.947 3.053 9 H -0.264 1.264 10 H -0.297 1.297 11 H -0.245 1.245 12 N -0.524 5.524 13 C 0.060 3.940 14 C 0.070 3.930 15 N -0.568 5.568 16 C 0.030 3.970 17 C 0.068 3.932 18 C 0.061 3.939 19 H 0.035 0.965 20 H 0.063 0.937 21 H 0.050 0.950 22 H 0.264 0.736 23 H 0.011 0.989 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.012 0.988 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 -0.296 -13.951 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 H 0.052 0.948 4 C -0.574 4.574 5 H 0.052 0.948 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.773 3.227 9 H -0.190 1.190 10 H -0.225 1.225 11 H -0.168 1.168 12 N -0.248 5.248 13 C -0.068 4.068 14 C -0.058 4.058 15 N -0.294 5.294 16 C -0.118 4.118 17 C -0.060 4.060 18 C -0.067 4.067 19 H 0.054 0.946 20 H 0.082 0.918 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.030 0.970 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.030 0.970 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.384 -0.294 -13.795 13.803 hybrid contribution -0.181 0.412 1.027 1.121 sum -0.565 0.118 -12.768 12.781 Atomic orbital electron populations 1.21988 0.96600 1.01096 0.99679 1.19663 0.93070 0.94265 0.86670 0.94772 1.21834 1.35021 1.08726 0.91829 0.94843 1.25869 0.96424 1.00786 0.95393 1.70083 1.48488 1.41703 0.98740 0.85845 0.79070 0.79963 0.77808 1.19018 1.22485 1.16826 1.62639 1.11638 1.12431 1.38111 1.22000 0.88626 0.99758 0.96457 1.22100 1.00480 0.87261 0.95985 1.62081 1.13050 1.13716 1.40544 1.22368 1.01070 0.98995 0.89371 1.22130 0.87229 1.00391 0.96273 1.22026 0.99894 0.88648 0.96175 0.94627 0.91795 0.93051 0.92690 0.97011 0.90851 0.89346 0.93614 0.90668 0.94890 0.90713 0.93657 0.89548 0.96959 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.65 71.98 0.62 -5.07 16 2 C 0.17 8.08 1.92 44.17 0.08 8.17 16 3 H 0.03 1.65 6.75 -2.38 -0.02 1.63 16 4 C -0.54 -30.55 7.67 25.60 0.20 -30.35 16 5 H 0.03 2.17 6.06 -2.91 -0.02 2.16 16 6 C 0.01 0.75 5.45 84.65 0.46 1.21 16 7 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 8 Si 0.95 44.82 24.65 68.60 1.69 46.51 16 9 H -0.26 -11.89 6.88 99.48 0.68 -11.21 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.24 -10.71 6.39 99.48 0.64 -10.07 16 12 N -0.52 -21.83 4.68 -874.89 -4.09 -25.92 16 13 C 0.06 2.38 5.36 86.31 0.46 2.85 16 14 C 0.07 2.15 5.62 86.31 0.49 2.63 16 15 N -0.57 -17.56 4.97 -921.95 -4.58 -22.14 16 16 C 0.03 0.66 9.60 127.69 1.23 1.88 16 17 C 0.07 2.11 5.62 86.31 0.49 2.60 16 18 C 0.06 2.43 4.96 86.31 0.43 2.86 16 19 H 0.04 1.52 3.98 -2.39 -0.01 1.51 16 20 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 21 H 0.05 2.12 6.42 -2.39 -0.02 2.10 16 22 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.01 0.55 7.17 -2.39 -0.02 0.53 16 24 H 0.07 2.74 8.09 -2.39 -0.02 2.72 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.09 2.38 8.13 -2.39 -0.02 2.36 16 32 H 0.01 0.59 6.28 -2.39 -0.02 0.57 16 33 H 0.08 2.90 6.25 -2.39 -0.01 2.89 16 Total: -1.00 -65.79 247.93 -1.25 -67.05 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.98 Total: 7.55 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.45 Total: -13.22 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -8.37 Total: -107.89 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.69 Total: 46.51 kcal Total: -65.79 -1.25 -67.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -65.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds