Wall clock time and date at job start Mon Mar 30 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46948 * 2 1 4 4 C 1.50697 * 109.47348 * 120.00398 * 2 1 3 5 5 H 1.07997 * 120.00003 * 120.00059 * 4 2 1 6 6 C 1.37879 * 119.99500 * 299.99769 * 4 2 1 7 7 N 1.31513 * 120.00684 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99875 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46767 * 90.00038 * 8 6 4 10 10 H 1.48500 * 109.47325 * 210.00503 * 8 6 4 11 11 H 1.48510 * 109.46917 * 330.00399 * 8 6 4 12 12 N 1.46901 * 109.47031 * 240.00289 * 2 1 3 13 13 C 1.46854 * 111.00034 * 69.99858 * 12 2 1 14 14 C 1.53029 * 109.52283 * 174.15832 * 13 12 2 15 15 C 1.53126 * 109.27795 * 59.18140 * 14 13 12 16 16 N 1.46903 * 109.52158 * 182.43945 * 15 14 13 17 17 C 1.53124 * 109.15878 * 302.34185 * 15 14 13 18 18 C 1.46843 * 111.00022 * 305.78980 * 12 2 1 19 19 H 1.09001 * 109.47370 * 60.00191 * 1 2 3 20 20 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47144 * 299.99424 * 1 2 3 22 22 H 0.96992 * 120.00614 * 179.97438 * 7 6 4 23 23 H 1.08999 * 109.45788 * 54.14266 * 13 12 2 24 24 H 1.09003 * 109.45264 * 294.17148 * 13 12 2 25 25 H 1.08994 * 109.50822 * 299.23828 * 14 13 12 26 26 H 1.09001 * 109.50199 * 179.11868 * 14 13 12 27 27 H 1.08998 * 109.52297 * 62.25132 * 15 14 13 28 28 H 1.00894 * 110.99732 * 179.97438 * 16 15 14 29 29 H 1.00900 * 110.99988 * 303.95636 * 16 15 14 30 30 H 1.08997 * 109.50088 * 177.59509 * 17 15 14 31 31 H 1.09004 * 109.50324 * 297.71684 * 17 15 14 32 32 H 1.09001 * 109.45906 * 305.85080 * 18 12 2 33 33 H 1.08997 * 109.46476 * 65.82626 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9429 0.8296 2.6035 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4122 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5664 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 1.7530 0.0971 -2.4087 14 6 2.4025 -0.5821 -3.6164 15 6 1.8311 -1.9944 -3.7701 16 7 2.4931 -2.6723 -4.8927 17 6 2.0794 -2.7801 -2.4795 18 6 1.4392 -2.0372 -1.3046 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 0.7083 1.1607 3.4844 23 1 2.1681 1.0977 -2.2879 24 1 0.6767 0.1670 -2.5665 25 1 3.4803 -0.6401 -3.4654 26 1 2.1911 -0.0042 -4.5161 27 1 0.7594 -1.9351 -3.9601 28 1 2.1329 -3.6070 -5.0138 29 1 2.4025 -2.1365 -5.7429 30 1 1.6372 -3.7725 -2.5669 31 1 3.1522 -2.8726 -2.3105 32 1 1.6265 -2.5867 -0.3821 33 1 0.3645 -1.9571 -1.4678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:40 Heat of formation + Delta-G solvation = -5.220844 kcal Electronic energy + Delta-G solvation = -13348.531806 eV Core-core repulsion = 11215.530107 eV Total energy + Delta-G solvation = -2133.001699 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.62814 -35.24356 -32.66832 -30.32509 -30.18116 -27.19892 -25.20856 -22.77837 -22.43882 -20.16412 -18.62225 -16.14970 -15.42053 -15.30183 -14.79323 -14.21125 -14.05669 -13.57297 -12.88227 -12.69561 -12.02786 -11.73854 -11.38067 -11.17312 -10.99650 -10.78743 -10.58192 -10.50021 -10.20521 -10.02456 -9.77394 -9.59102 -8.83927 -8.57795 -8.34716 -7.07061 -5.97745 -4.01158 3.33660 3.39717 3.43413 4.44182 4.62137 5.00888 5.18548 5.33387 5.34582 5.60258 5.81515 5.98235 6.09372 6.15400 6.24365 6.32088 6.48156 6.63123 6.68353 6.81877 6.85554 6.89981 7.17775 7.29756 7.49894 7.55233 7.75130 7.88962 8.20089 8.43785 8.65756 9.05430 9.63883 11.09452 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058014 B = 0.009406 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.528616 B = 2976.112772 C = 3229.409056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.055 3.945 14 C -0.106 4.106 15 C 0.090 3.910 16 N -0.847 5.847 17 C -0.109 4.109 18 C 0.065 3.935 19 H 0.006 0.994 20 H 0.029 0.971 21 H 0.087 0.913 22 H 0.260 0.740 23 H 0.067 0.933 24 H 0.021 0.979 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.336 0.664 29 H 0.335 0.665 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -4.276 -10.380 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.074 4.074 14 C -0.145 4.145 15 C -0.021 4.021 16 N -0.376 5.376 17 C -0.147 4.147 18 C -0.064 4.064 19 H 0.025 0.975 20 H 0.049 0.951 21 H 0.106 0.894 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.791 -4.121 -9.759 10.623 hybrid contribution -1.666 -0.311 0.340 1.728 sum -0.875 -4.432 -9.419 10.447 Atomic orbital electron populations 1.22398 1.00955 0.99282 1.00396 1.19296 0.89680 0.94490 0.86122 0.94391 1.21128 1.30331 1.12449 0.89654 0.91936 1.24935 0.95269 0.95173 0.98998 1.69883 1.37159 1.23205 1.23332 0.86527 0.78499 0.80022 0.82518 1.20698 1.21425 1.19945 1.62244 1.58936 1.01878 1.02298 1.21974 0.97172 0.97342 0.90913 1.21596 1.01832 0.93966 0.97064 1.21419 0.94480 0.94803 0.91351 1.58763 1.64512 1.06386 1.07954 1.21657 1.02440 0.97117 0.93493 1.21918 0.95208 0.91489 0.97828 0.97538 0.95147 0.89393 0.93060 0.91413 0.96042 0.90578 0.92999 0.95639 0.85219 0.85308 0.92983 0.90678 0.89833 0.96042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.23 37.16 0.31 -3.89 16 2 C 0.21 5.36 2.31 -68.86 -0.16 5.21 16 3 H 0.04 1.06 7.99 -51.93 -0.41 0.65 16 4 C -0.50 -13.74 7.88 -34.44 -0.27 -14.01 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.53 -11.60 4.60 -228.08 -1.05 -12.64 16 13 C 0.06 1.04 5.13 -3.83 -0.02 1.02 16 14 C -0.11 -1.67 5.64 -26.65 -0.15 -1.82 16 15 C 0.09 1.34 3.32 -67.58 -0.22 1.11 16 16 N -0.85 -10.40 9.25 -4.56 -0.04 -10.44 16 17 C -0.11 -1.80 5.68 -26.65 -0.15 -1.95 16 18 C 0.06 1.29 4.55 -3.83 -0.02 1.27 16 19 H 0.01 0.13 6.81 -51.93 -0.35 -0.22 16 20 H 0.03 0.72 6.46 -51.93 -0.34 0.38 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 24 H 0.02 0.41 6.87 -51.93 -0.36 0.05 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.34 3.56 9.04 -39.29 -0.36 3.20 16 29 H 0.34 3.49 9.00 -39.29 -0.35 3.14 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.81 6.70 -51.93 -0.35 1.47 16 33 H 0.02 0.43 6.58 -51.93 -0.34 0.09 16 LS Contribution 253.71 15.07 3.82 3.82 Total: -1.00 -28.51 253.71 -7.65 -36.17 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.21 Total: 3.27 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.78 Total: -11.58 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.46 Total: -48.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.51 -7.65 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.946 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds