Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.47445 * 111.00298 * 69.87084 * 12 11 10 14 14 C 1.54316 * 107.23323 * 123.25628 * 13 12 11 15 15 C 1.55136 * 103.02142 * 22.28613 * 14 13 12 16 16 H 1.09000 * 110.99372 * 82.43738 * 15 14 13 17 17 N 1.46899 * 110.99236 * 206.21588 * 15 14 13 18 18 C 1.47847 * 110.99838 * 190.71344 * 12 11 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 23 23 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 24 24 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 25 25 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 26 26 H 1.08996 * 109.88574 * 242.66278 * 13 12 11 27 27 H 1.09001 * 109.88453 * 3.84819 * 13 12 11 28 28 H 1.09003 * 110.70586 * 140.66694 * 14 13 12 29 29 H 1.09000 * 110.70616 * 263.90055 * 14 13 12 30 30 H 1.00901 * 110.99999 * 298.54937 * 17 15 14 31 31 H 1.00901 * 110.99565 * 62.49592 * 17 15 14 32 32 H 1.08992 * 110.37569 * 332.46314 * 18 12 11 33 33 H 1.09002 * 110.37215 * 94.80650 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4346 -6.1037 -0.0213 13 6 3.1370 -6.2034 1.2712 14 6 2.8896 -7.6253 1.8175 15 6 2.5368 -8.4336 0.5412 16 1 3.4389 -8.7464 0.0153 17 7 1.6933 -9.5911 0.8677 18 6 1.7482 -7.3865 -0.2843 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.8718 -3.6005 -0.9002 23 1 2.8717 -3.6084 0.8798 24 1 0.8531 -5.0490 0.8724 25 1 0.8537 -5.0406 -0.9075 26 1 4.2052 -6.0426 1.1261 27 1 2.7397 -5.4644 1.9671 28 1 3.7907 -8.0200 2.2868 29 1 2.0553 -7.6289 2.5189 30 1 2.1733 -10.2243 1.4896 31 1 0.8120 -9.2967 1.2611 32 1 0.7129 -7.3390 0.0530 33 1 1.7916 -7.6294 -1.3460 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050243770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = -14.270681 kcal Electronic energy + Delta-G solvation = -12556.177842 eV Core-core repulsion = 10422.783712 eV Total energy + Delta-G solvation = -2133.394130 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.11720 -34.97487 -33.25915 -31.43722 -29.61403 -27.65762 -25.60781 -22.99859 -21.08303 -20.70710 -19.54735 -16.74946 -16.33762 -15.52265 -15.10855 -14.43547 -13.99537 -13.48193 -13.33904 -13.24341 -12.40013 -12.19875 -11.92161 -11.43610 -11.26119 -11.09258 -10.84059 -10.68981 -10.51625 -10.44778 -9.63537 -9.29878 -9.04002 -8.88941 -8.31425 -8.06331 -5.96948 -3.98930 3.35640 3.39555 3.42497 4.05000 4.40989 4.49069 4.64544 4.83540 4.99816 5.33622 5.38693 5.38770 5.61153 5.70515 5.78094 5.89591 5.99029 6.11218 6.18978 6.34443 6.72415 6.79703 6.87988 7.14066 7.18088 7.29640 7.42715 7.71398 7.86534 8.03587 8.47188 9.08043 9.64823 11.14549 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.089406 B = 0.005800 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.102540 B = 4826.582719 C = 4968.338721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.052 3.948 12 N -0.530 5.530 13 C 0.044 3.956 14 C -0.179 4.179 15 C 0.081 3.919 16 H 0.096 0.904 17 N -0.840 5.840 18 C 0.048 3.952 19 H 0.260 0.740 20 H 0.012 0.988 21 H 0.016 0.984 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.341 0.659 31 H 0.340 0.660 32 H 0.045 0.955 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -15.231 3.138 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.075 4.075 12 N -0.254 5.254 13 C -0.084 4.084 14 C -0.219 4.219 15 C -0.031 4.031 16 H 0.114 0.886 17 N -0.369 5.369 18 C -0.081 4.081 19 H 0.070 0.930 20 H 0.031 0.969 21 H 0.034 0.966 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.063 0.937 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.080 -15.171 1.945 15.831 hybrid contribution -0.128 1.224 1.713 2.110 sum 3.953 -13.947 3.658 14.951 Atomic orbital electron populations 1.69961 1.06069 1.26639 1.51009 1.25029 0.94844 0.99238 0.95385 0.86654 0.79571 0.83121 0.78624 1.20207 1.21311 1.20285 1.21223 0.93021 0.91055 1.50391 0.92729 1.19076 0.94048 0.91450 0.97039 1.21628 0.99086 0.92621 1.00804 1.22474 0.93632 0.91327 1.00114 1.63651 1.28231 1.02998 1.30526 1.22757 1.00208 0.95199 0.90250 1.23629 1.01815 0.97744 0.98751 1.22657 0.96450 0.89411 0.94589 0.88642 1.58795 1.07666 1.17579 1.52813 1.23016 0.95957 0.88424 1.00668 0.93003 0.96922 0.96593 0.92580 0.93591 0.95325 0.91251 0.90621 0.92187 0.91003 0.91853 0.84602 0.84736 0.93706 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.23 5.18 -26.74 -0.14 -2.37 16 11 C 0.05 0.94 4.54 -3.83 -0.02 0.93 16 12 N -0.53 -8.31 5.16 -231.25 -1.19 -9.50 16 13 C 0.04 0.62 6.21 -2.84 -0.02 0.60 16 14 C -0.18 -1.95 6.63 -24.91 -0.17 -2.12 16 15 C 0.08 0.89 4.20 -65.57 -0.28 0.62 16 16 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 17 N -0.84 -7.83 9.42 -2.86 -0.03 -7.85 16 18 C 0.05 0.63 6.35 -2.29 -0.01 0.62 16 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 20 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.05 0.98 7.14 -51.93 -0.37 0.60 16 24 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 25 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.91 6.91 -51.93 -0.36 0.55 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.34 2.55 9.07 -39.29 -0.36 2.19 16 31 H 0.34 2.97 8.84 -39.29 -0.35 2.62 16 32 H 0.04 0.59 7.64 -51.93 -0.40 0.20 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -30.46 268.20 -8.23 -38.69 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.59 Total: -0.56 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.18 Total: -15.12 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.48 Total: -44.03 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.46 -8.23 -38.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.419 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds