Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.47445 * 111.00298 * 69.87084 * 12 11 10 14 14 C 1.54316 * 107.23323 * 123.25628 * 13 12 11 15 15 C 1.55136 * 103.02142 * 22.28613 * 14 13 12 16 16 H 1.09000 * 110.99372 * 82.43738 * 15 14 13 17 17 N 1.46899 * 110.99236 * 206.21588 * 15 14 13 18 18 C 1.47847 * 110.99838 * 190.71344 * 12 11 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 23 23 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 24 24 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 25 25 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 26 26 H 1.08996 * 109.88574 * 242.66278 * 13 12 11 27 27 H 1.09001 * 109.88453 * 3.84819 * 13 12 11 28 28 H 1.09003 * 110.70586 * 140.66694 * 14 13 12 29 29 H 1.09000 * 110.70616 * 263.90055 * 14 13 12 30 30 H 1.00901 * 110.99999 * 298.54937 * 17 15 14 31 31 H 1.00901 * 110.99565 * 62.49592 * 17 15 14 32 32 H 1.08992 * 110.37569 * 332.46314 * 18 12 11 33 33 H 1.09002 * 110.37215 * 94.80650 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4346 -6.1037 -0.0213 13 6 3.1370 -6.2034 1.2712 14 6 2.8896 -7.6253 1.8175 15 6 2.5368 -8.4336 0.5412 16 1 3.4389 -8.7464 0.0153 17 7 1.6933 -9.5911 0.8677 18 6 1.7482 -7.3865 -0.2843 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.8718 -3.6005 -0.9002 23 1 2.8717 -3.6084 0.8798 24 1 0.8531 -5.0490 0.8724 25 1 0.8537 -5.0406 -0.9075 26 1 4.2052 -6.0426 1.1261 27 1 2.7397 -5.4644 1.9671 28 1 3.7907 -8.0200 2.2868 29 1 2.0553 -7.6289 2.5189 30 1 2.1733 -10.2243 1.4896 31 1 0.8120 -9.2967 1.2611 32 1 0.7129 -7.3390 0.0530 33 1 1.7916 -7.6294 -1.3460 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050243770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = -36.825533 kcal Electronic energy + Delta-G solvation = -12557.155894 eV Core-core repulsion = 10422.783712 eV Total energy + Delta-G solvation = -2134.372182 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.22638 -36.48584 -34.98192 -33.11895 -30.83223 -29.03696 -27.20300 -24.68599 -22.59238 -21.76291 -21.03113 -18.49528 -17.69368 -16.83520 -16.42468 -16.24683 -15.35915 -14.71642 -14.54980 -14.43716 -14.04419 -13.77388 -13.38800 -13.09559 -12.75310 -12.53520 -12.34495 -12.22616 -12.18364 -11.71581 -11.49812 -11.38748 -11.09438 -10.55866 -9.65520 -9.30775 -8.20933 -6.32343 1.39564 1.43086 1.51090 2.40582 2.93841 3.12022 3.49144 3.65936 3.91138 4.08247 4.17924 4.29379 4.34313 4.50339 4.64801 4.69436 4.80271 4.92075 4.95094 5.03913 5.08908 5.21472 5.23479 5.50187 5.71488 5.83856 6.00780 6.05151 6.19561 6.26112 6.55902 6.83844 7.36906 8.90931 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.089406 B = 0.005800 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.102540 B = 4826.582719 C = 4968.338721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.065 3.935 12 N -0.539 5.539 13 C 0.038 3.962 14 C -0.167 4.167 15 C 0.093 3.907 16 H 0.098 0.902 17 N -0.840 5.840 18 C 0.044 3.956 19 H 0.264 0.736 20 H -0.010 1.010 21 H -0.008 1.008 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.025 0.975 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.355 0.645 31 H 0.344 0.656 32 H 0.044 0.956 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -15.905 3.552 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.063 4.063 12 N -0.264 5.264 13 C -0.090 4.090 14 C -0.208 4.208 15 C -0.020 4.020 16 H 0.116 0.884 17 N -0.371 5.371 18 C -0.084 4.084 19 H 0.073 0.927 20 H 0.008 0.992 21 H 0.010 0.990 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.062 0.938 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.287 -15.876 2.367 16.900 hybrid contribution -0.526 1.396 1.578 2.172 sum 4.761 -14.480 3.945 15.745 Atomic orbital electron populations 1.70094 1.07834 1.27886 1.51596 1.26000 0.95794 1.03415 0.94598 0.85479 0.78276 0.77940 0.79224 1.19168 1.20657 1.19118 1.21657 0.93503 0.92391 1.50751 0.92321 1.18975 0.94395 0.93143 0.94701 1.21366 0.97918 0.92704 1.00556 1.22176 0.93494 0.90860 0.99815 1.63565 1.27716 1.03280 1.31796 1.22828 0.99963 0.96958 0.89274 1.23573 1.02941 0.95501 0.98761 1.22499 0.96211 0.89262 0.94042 0.88364 1.58756 1.07787 1.16983 1.53532 1.23070 0.96159 0.87983 1.01183 0.92717 0.99189 0.98987 0.93064 0.93368 0.95631 0.91641 0.90303 0.93725 0.88942 0.91496 0.83095 0.84244 0.93782 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.82 5.18 30.59 0.16 -3.67 16 11 C 0.06 2.36 4.54 86.30 0.39 2.76 16 12 N -0.54 -16.48 5.16 -885.55 -4.57 -21.05 16 13 C 0.04 1.01 6.21 86.65 0.54 1.55 16 14 C -0.17 -3.25 6.63 31.77 0.21 -3.03 16 15 C 0.09 1.81 4.20 46.30 0.19 2.00 16 16 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 17 N -0.84 -13.50 9.42 -162.96 -1.54 -15.04 16 18 C 0.04 1.11 6.35 86.77 0.55 1.66 16 19 H 0.26 15.34 8.31 -92.70 -0.77 14.56 16 20 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 21 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 22 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 23 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16 24 H 0.03 0.94 7.96 -2.39 -0.02 0.92 16 25 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.32 6.91 -2.39 -0.02 1.31 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.35 4.25 9.07 -89.69 -0.81 3.43 16 31 H 0.34 5.21 8.84 -89.69 -0.79 4.41 16 32 H 0.04 1.12 7.64 -2.39 -0.02 1.10 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -64.91 268.20 -1.43 -66.34 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -0.52 Total: 8.87 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 2.89 Total: -28.54 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -5.82 Total: -93.67 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.91 -1.43 -66.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.516 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds