Wall clock time and date at job start Mon Mar 30 2020 01:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99983 * 2 1 4 4 H 1.48493 * 109.47071 * 269.99743 * 3 2 1 5 5 H 1.48502 * 109.47087 * 29.99849 * 3 2 1 6 6 H 1.48507 * 109.47172 * 149.99682 * 3 2 1 7 7 C 1.37881 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47227 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47200 * 174.72185 * 11 10 9 13 13 C 1.47897 * 111.00118 * 174.72993 * 12 11 10 14 14 C 1.53992 * 107.05920 * 214.15537 * 13 12 11 15 15 C 1.54602 * 105.13966 * 1.22476 * 14 13 12 16 16 H 1.08994 * 110.72162 * 263.42007 * 15 14 13 17 17 N 1.46898 * 110.72239 * 140.31445 * 15 14 13 18 18 C 1.48536 * 110.99905 * 57.33056 * 12 11 10 19 19 H 0.96999 * 120.00301 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47249 * 59.99898 * 9 7 2 21 21 H 1.08999 * 109.47073 * 299.99896 * 9 7 2 22 22 H 1.09001 * 109.47274 * 59.99635 * 10 9 7 23 23 H 1.08999 * 109.46739 * 299.99822 * 10 9 7 24 24 H 1.09002 * 109.47145 * 54.71968 * 11 10 9 25 25 H 1.09001 * 109.46879 * 294.71874 * 11 10 9 26 26 H 1.08997 * 109.91734 * 333.51057 * 13 12 11 27 27 H 1.08999 * 109.91676 * 94.80185 * 13 12 11 28 28 H 1.08999 * 110.30878 * 120.13950 * 14 13 12 29 29 H 1.09001 * 110.30950 * 242.30664 * 14 13 12 30 30 H 1.00901 * 110.99814 * 61.45642 * 17 15 14 31 31 H 1.00898 * 110.99925 * 185.40496 * 17 15 14 32 32 H 1.08996 * 110.67281 * 278.15392 * 18 12 11 33 33 H 1.09000 * 110.66522 * 41.29334 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4299 -6.1008 -0.1250 13 6 1.7391 -7.4028 -0.0031 14 6 2.7124 -8.3664 0.7009 15 6 3.9742 -7.5227 0.9944 16 1 4.7261 -7.6708 0.2193 17 7 4.5226 -7.8505 2.3172 18 6 3.4338 -6.0709 0.9694 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5572 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8713 -3.6040 0.8922 23 1 2.8725 -3.6047 -0.8877 24 1 0.7855 -5.0052 -0.8385 25 1 0.9254 -5.0867 0.9341 26 1 0.8338 -7.2884 0.5929 27 1 1.4894 -7.7848 -0.9929 28 1 2.2768 -8.7316 1.6309 29 1 2.9595 -9.2009 0.0446 30 1 4.8006 -8.8194 2.3634 31 1 5.2928 -7.2419 2.5503 32 1 4.2333 -5.3668 0.7390 33 1 2.9605 -5.8202 1.9187 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050243771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:03 Heat of formation + Delta-G solvation = -12.984044 kcal Electronic energy + Delta-G solvation = -12580.676492 eV Core-core repulsion = 10447.338155 eV Total energy + Delta-G solvation = -2133.338337 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.95837 -34.88731 -33.28936 -31.62318 -29.37632 -27.61495 -25.81722 -22.86799 -20.98382 -20.49900 -19.55339 -16.37288 -16.18154 -15.41780 -15.40331 -14.52833 -14.38245 -13.78345 -13.31640 -12.74673 -12.39633 -12.11121 -11.49961 -11.37708 -11.18561 -10.99875 -10.82349 -10.75773 -10.48097 -10.36904 -9.63106 -9.29312 -9.01570 -8.85835 -8.30786 -8.12547 -5.96052 -3.98010 3.34748 3.40552 3.44229 4.08568 4.48819 4.61268 4.70934 4.78755 5.09935 5.36872 5.39714 5.66426 5.75308 5.80767 5.83653 5.89200 6.06049 6.10939 6.15034 6.35575 6.70170 6.82506 6.96679 7.12862 7.25065 7.28235 7.43689 7.72363 7.88006 8.04523 8.47939 9.09072 9.65714 11.15498 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.064153 B = 0.006249 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.350303 B = 4479.956952 C = 4785.392231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.048 3.952 12 N -0.518 5.518 13 C 0.036 3.964 14 C -0.125 4.125 15 C 0.081 3.919 16 H 0.049 0.951 17 N -0.844 5.844 18 C 0.044 3.956 19 H 0.260 0.740 20 H 0.016 0.984 21 H 0.014 0.986 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.339 0.661 31 H 0.343 0.657 32 H 0.080 0.920 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -15.120 1.889 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.080 4.080 12 N -0.243 5.243 13 C -0.093 4.093 14 C -0.163 4.163 15 C -0.031 4.031 16 H 0.066 0.934 17 N -0.374 5.374 18 C -0.084 4.084 19 H 0.069 0.931 20 H 0.035 0.965 21 H 0.032 0.968 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.098 0.902 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.739 -14.746 1.645 15.909 hybrid contribution 0.831 0.692 0.254 1.111 sum 6.570 -14.054 1.899 15.629 Atomic orbital electron populations 1.69965 1.06062 1.26528 1.51070 1.25027 0.94841 0.99234 0.95405 0.86597 0.79835 0.83501 0.78088 1.20662 1.21252 1.19906 1.21254 0.93023 0.91071 1.50291 0.92725 1.19075 0.94032 0.91371 0.97125 1.21664 0.99226 0.92904 1.00636 1.22477 0.94333 0.91205 0.99943 1.64820 1.14309 1.01916 1.43238 1.22822 0.96090 0.90284 1.00100 1.22450 0.95506 0.97820 1.00537 1.22286 0.95743 0.95783 0.89308 0.93353 1.58712 1.40535 1.08567 1.29609 1.23166 0.96142 0.95156 0.93931 0.93052 0.96544 0.96802 0.93572 0.92599 0.90954 0.95176 0.93733 0.90663 0.90666 0.91614 0.84829 0.84423 0.90176 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.31 4.80 -26.73 -0.13 -2.43 16 11 C 0.05 0.89 4.87 -3.82 -0.02 0.87 16 12 N -0.52 -8.37 5.36 -230.46 -1.24 -9.60 16 13 C 0.04 0.48 6.70 -2.76 -0.02 0.46 16 14 C -0.12 -1.42 6.66 -25.37 -0.17 -1.59 16 15 C 0.08 0.96 4.19 -65.85 -0.28 0.68 16 16 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 17 N -0.84 -8.49 9.28 -3.09 -0.03 -8.52 16 18 C 0.04 0.66 5.00 -1.90 -0.01 0.65 16 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 20 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.05 0.98 7.17 -51.93 -0.37 0.61 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.03 0.56 7.95 -51.93 -0.41 0.15 16 26 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.34 2.70 9.07 -39.29 -0.36 2.35 16 31 H 0.34 3.08 9.07 -39.29 -0.36 2.72 16 32 H 0.08 1.22 7.77 -51.93 -0.40 0.81 16 33 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -30.88 268.34 -8.31 -39.19 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.63 Total: -0.59 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.17 Total: -14.78 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.53 Total: -44.89 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.88 -8.31 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.205 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds