Wall clock time and date at job start Mon Mar 30 2020 01:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99983 * 2 1 4 4 H 1.48493 * 109.47071 * 269.99743 * 3 2 1 5 5 H 1.48502 * 109.47087 * 29.99849 * 3 2 1 6 6 H 1.48507 * 109.47172 * 149.99682 * 3 2 1 7 7 C 1.37881 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47227 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47200 * 174.72185 * 11 10 9 13 13 C 1.47897 * 111.00118 * 174.72993 * 12 11 10 14 14 C 1.53992 * 107.05920 * 214.15537 * 13 12 11 15 15 C 1.54602 * 105.13966 * 1.22476 * 14 13 12 16 16 H 1.08994 * 110.72162 * 263.42007 * 15 14 13 17 17 N 1.46898 * 110.72239 * 140.31445 * 15 14 13 18 18 C 1.48536 * 110.99905 * 57.33056 * 12 11 10 19 19 H 0.96999 * 120.00301 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47249 * 59.99898 * 9 7 2 21 21 H 1.08999 * 109.47073 * 299.99896 * 9 7 2 22 22 H 1.09001 * 109.47274 * 59.99635 * 10 9 7 23 23 H 1.08999 * 109.46739 * 299.99822 * 10 9 7 24 24 H 1.09002 * 109.47145 * 54.71968 * 11 10 9 25 25 H 1.09001 * 109.46879 * 294.71874 * 11 10 9 26 26 H 1.08997 * 109.91734 * 333.51057 * 13 12 11 27 27 H 1.08999 * 109.91676 * 94.80185 * 13 12 11 28 28 H 1.08999 * 110.30878 * 120.13950 * 14 13 12 29 29 H 1.09001 * 110.30950 * 242.30664 * 14 13 12 30 30 H 1.00901 * 110.99814 * 61.45642 * 17 15 14 31 31 H 1.00898 * 110.99925 * 185.40496 * 17 15 14 32 32 H 1.08996 * 110.67281 * 278.15392 * 18 12 11 33 33 H 1.09000 * 110.66522 * 41.29334 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4299 -6.1008 -0.1250 13 6 1.7391 -7.4028 -0.0031 14 6 2.7124 -8.3664 0.7009 15 6 3.9742 -7.5227 0.9944 16 1 4.7261 -7.6708 0.2193 17 7 4.5226 -7.8505 2.3172 18 6 3.4338 -6.0709 0.9694 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5572 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8713 -3.6040 0.8922 23 1 2.8725 -3.6047 -0.8877 24 1 0.7855 -5.0052 -0.8385 25 1 0.9254 -5.0867 0.9341 26 1 0.8338 -7.2884 0.5929 27 1 1.4894 -7.7848 -0.9929 28 1 2.2768 -8.7316 1.6309 29 1 2.9595 -9.2009 0.0446 30 1 4.8006 -8.8194 2.3634 31 1 5.2928 -7.2419 2.5503 32 1 4.2333 -5.3668 0.7390 33 1 2.9605 -5.8202 1.9187 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050243771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:03 Heat of formation + Delta-G solvation = -36.103318 kcal Electronic energy + Delta-G solvation = -12581.679019 eV Core-core repulsion = 10447.338155 eV Total energy + Delta-G solvation = -2134.340864 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.12007 -36.44129 -34.98042 -33.28818 -30.78392 -28.81473 -27.57543 -24.61147 -22.49027 -21.68373 -20.97729 -18.50984 -17.26509 -16.77725 -16.42276 -16.30173 -15.91743 -15.01769 -14.69147 -14.25473 -14.07103 -13.69963 -13.28848 -12.90873 -12.65164 -12.45106 -12.31138 -12.25003 -11.94893 -11.74980 -11.51210 -11.36416 -11.09576 -10.56347 -9.66828 -9.41602 -8.20931 -6.32418 1.39568 1.41515 1.52617 2.40568 2.95275 3.12060 3.62279 3.66927 3.80721 4.15325 4.20615 4.31011 4.35472 4.64768 4.66834 4.73878 4.84809 4.93532 4.98062 5.01114 5.11531 5.14714 5.23863 5.49394 5.70242 5.83291 5.91816 6.01859 6.24464 6.26785 6.61333 6.83878 7.36855 8.91231 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.064153 B = 0.006249 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.350303 B = 4479.956952 C = 4785.392231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.089 4.089 11 C 0.059 3.941 12 N -0.526 5.526 13 C 0.031 3.969 14 C -0.117 4.117 15 C 0.089 3.911 16 H 0.056 0.944 17 N -0.848 5.848 18 C 0.040 3.960 19 H 0.264 0.736 20 H -0.007 1.007 21 H -0.011 1.011 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.025 0.975 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.354 0.646 31 H 0.350 0.650 32 H 0.072 0.928 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -15.817 1.928 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.069 4.069 12 N -0.250 5.250 13 C -0.097 4.097 14 C -0.155 4.155 15 C -0.023 4.023 16 H 0.074 0.926 17 N -0.380 5.380 18 C -0.088 4.088 19 H 0.073 0.927 20 H 0.011 0.989 21 H 0.008 0.992 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.091 0.909 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.145 -15.473 1.689 17.127 hybrid contribution 0.372 0.878 0.251 0.986 sum 7.516 -14.595 1.939 16.531 Atomic orbital electron populations 1.70097 1.07850 1.27842 1.51630 1.26007 0.95801 1.03448 0.94605 0.85415 0.78623 0.78231 0.78585 1.19630 1.20578 1.18759 1.21678 0.93499 0.92374 1.50684 0.92305 1.18975 0.94391 0.93108 0.94753 1.21393 0.98028 0.92825 1.00462 1.22207 0.94281 0.90823 0.99577 1.64775 1.14102 1.02253 1.43888 1.22947 0.96381 0.89284 1.01117 1.22428 0.94481 0.97737 1.00895 1.22152 0.96163 0.93528 0.90425 0.92647 1.58651 1.41136 1.09803 1.28451 1.23191 0.95555 0.97434 0.92634 0.92704 0.98864 0.99225 0.93426 0.92864 0.91270 0.95690 0.94159 0.89493 0.90415 0.89282 0.83163 0.83710 0.90924 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.93 4.80 30.59 0.15 -3.78 16 11 C 0.06 2.22 4.87 86.30 0.42 2.64 16 12 N -0.53 -16.53 5.36 -883.03 -4.73 -21.27 16 13 C 0.03 0.78 6.70 86.45 0.58 1.35 16 14 C -0.12 -2.35 6.66 31.47 0.21 -2.14 16 15 C 0.09 1.92 4.19 46.12 0.19 2.12 16 16 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 17 N -0.85 -15.15 9.28 -163.69 -1.52 -16.67 16 18 C 0.04 1.16 5.00 86.65 0.43 1.60 16 19 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 20 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 21 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 22 H 0.05 2.06 7.17 -2.39 -0.02 2.04 16 23 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.02 0.95 7.95 -2.39 -0.02 0.93 16 26 H 0.04 1.05 7.65 -2.39 -0.02 1.03 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.35 4.65 9.07 -89.69 -0.81 3.84 16 31 H 0.35 5.58 9.07 -89.70 -0.81 4.77 16 32 H 0.07 2.17 7.77 -2.39 -0.02 2.15 16 33 H 0.04 1.24 8.02 -2.39 -0.02 1.23 16 Total: -1.00 -65.87 268.34 -1.66 -67.53 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -0.55 Total: 9.22 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 2.83 Total: -28.14 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -5.97 Total: -95.77 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.87 -1.66 -67.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.429 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds