Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00026 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99820 * 3 2 1 6 6 H 1.48500 * 109.47197 * 149.99999 * 3 2 1 7 7 C 1.37872 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47221 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.46903 * 179.97438 * 10 9 7 12 12 C 1.47887 * 111.01481 * 69.12508 * 11 10 9 13 13 C 1.54908 * 104.77420 * 146.33028 * 12 11 10 14 14 C 1.55138 * 101.68619 * 322.97931 * 13 12 11 15 15 H 1.09003 * 110.70516 * 277.25131 * 14 13 12 16 16 C 1.53001 * 110.70765 * 154.19455 * 14 13 12 17 17 N 1.46904 * 109.46860 * 66.45123 * 16 14 13 18 18 C 1.47444 * 110.99660 * 190.00196 * 11 10 9 19 19 H 0.97006 * 120.00548 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47245 * 59.99726 * 9 7 2 21 21 H 1.09000 * 109.47104 * 300.00242 * 9 7 2 22 22 H 1.09005 * 109.47195 * 60.00323 * 10 9 7 23 23 H 1.08994 * 109.47178 * 299.99604 * 10 9 7 24 24 H 1.08993 * 110.35657 * 27.51601 * 12 11 10 25 25 H 1.09005 * 110.40536 * 265.16436 * 12 11 10 26 26 H 1.09002 * 110.99023 * 204.86730 * 13 12 11 27 27 H 1.08995 * 110.99233 * 81.08878 * 13 12 11 28 28 H 1.09002 * 109.47311 * 186.45000 * 16 14 13 29 29 H 1.08999 * 109.47004 * 306.45274 * 16 14 13 30 30 H 1.00902 * 110.99381 * 180.02562 * 17 16 14 31 31 H 1.00900 * 110.99797 * 303.95158 * 17 16 14 32 32 H 1.08998 * 109.89066 * 117.34098 * 18 11 10 33 33 H 1.08993 * 110.02675 * 356.21988 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 0.8193 -5.1479 -1.2895 13 6 0.8626 -6.6804 -1.5118 14 6 2.2635 -7.0398 -0.9504 15 1 3.0360 -6.8609 -1.6984 16 6 2.2993 -8.4939 -0.4758 17 7 2.1507 -9.3897 -1.6306 18 6 2.4208 -6.0695 0.2392 19 1 -0.4851 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6042 0.8895 23 1 2.8720 -3.6043 -0.8905 24 1 1.3465 -4.6329 -2.0924 25 1 -0.2128 -4.8023 -1.2291 26 1 0.7928 -6.9232 -2.5722 27 1 0.0757 -7.1794 -0.9465 28 1 3.2510 -8.6918 0.0175 29 1 1.4834 -8.6672 0.2259 30 1 2.1708 -10.3566 -1.3429 31 1 1.3064 -9.1825 -2.1426 32 1 2.1494 -6.5733 1.1669 33 1 3.4505 -5.7169 0.2964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050249008.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -13.149919 kcal Electronic energy + Delta-G solvation = -12677.160513 eV Core-core repulsion = 10543.814984 eV Total energy + Delta-G solvation = -2133.345530 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.89441 -35.15248 -33.18303 -31.32313 -28.96432 -28.42265 -24.62483 -23.46283 -21.49146 -19.99352 -19.77742 -16.39018 -16.05431 -15.75039 -14.70907 -14.49077 -14.24420 -13.67354 -13.22873 -12.91286 -12.45931 -12.16033 -11.97512 -11.31894 -11.01435 -10.91568 -10.79676 -10.58726 -10.49327 -10.45922 -9.80599 -9.31497 -9.09198 -8.86239 -8.31332 -7.66819 -5.96701 -3.99179 3.33831 3.39868 3.43393 4.37454 4.44494 4.61980 4.76813 4.86762 5.22472 5.39157 5.39661 5.57252 5.60896 5.71365 5.84428 5.98120 6.11188 6.21629 6.24613 6.45663 6.46953 6.54100 6.96044 7.01547 7.25329 7.54599 7.57769 7.81425 7.93373 8.12228 8.47018 9.08329 9.64378 11.14758 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.092484 B = 0.006210 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.681757 B = 4508.031512 C = 4642.176722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.058 3.942 11 N -0.531 5.531 12 C 0.049 3.951 13 C -0.127 4.127 14 C -0.109 4.109 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.853 5.853 18 C 0.047 3.953 19 H 0.260 0.740 20 H 0.015 0.985 21 H 0.024 0.976 22 H 0.059 0.941 23 H 0.021 0.979 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.338 0.662 31 H 0.340 0.660 32 H 0.069 0.931 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -14.994 -1.997 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.069 4.069 11 N -0.255 5.255 12 C -0.079 4.079 13 C -0.165 4.165 14 C -0.129 4.129 15 H 0.098 0.902 16 C -0.058 4.058 17 N -0.382 5.382 18 C -0.082 4.082 19 H 0.070 0.930 20 H 0.034 0.966 21 H 0.042 0.958 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.830 -14.499 -1.831 14.885 hybrid contribution 0.191 0.658 -0.163 0.705 sum 3.021 -13.840 -1.995 14.306 Atomic orbital electron populations 1.69976 1.06034 1.26528 1.50759 1.24990 0.94819 0.99152 0.95329 0.86599 0.79853 0.83518 0.78052 1.20714 1.21194 1.19891 1.21211 0.92970 0.91136 1.50773 0.92838 1.19054 0.93965 0.90083 0.97765 1.22544 0.96662 0.88886 0.98812 1.63675 1.27924 1.02326 1.31536 1.22974 1.00260 0.93974 0.90709 1.22791 0.96377 0.96843 1.00458 1.22436 0.98147 0.93971 0.98356 0.90215 1.21747 1.00504 0.92028 0.91497 1.58734 1.45677 1.07341 1.26440 1.22816 0.96016 0.91930 0.97439 0.93026 0.96619 0.95793 0.92249 0.96122 0.93587 0.90319 0.91252 0.91355 0.91158 0.95215 0.85011 0.84697 0.91275 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.77 5.02 -27.89 -0.14 0.63 16 10 C 0.06 1.28 4.51 -3.82 -0.02 1.26 16 11 N -0.53 -10.10 5.16 -231.21 -1.19 -11.30 16 12 C 0.05 0.84 5.79 -2.27 -0.01 0.83 16 13 C -0.13 -1.67 5.71 -24.59 -0.14 -1.82 16 14 C -0.11 -1.42 3.19 -88.80 -0.28 -1.71 16 15 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 16 C 0.07 0.78 6.15 -3.82 -0.02 0.76 16 17 N -0.85 -8.14 9.62 -10.37 -0.10 -8.24 16 18 C 0.05 0.72 6.46 -2.83 -0.02 0.70 16 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 20 H 0.02 0.44 7.49 -51.93 -0.39 0.05 16 21 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 23 H 0.02 0.45 7.85 -51.93 -0.41 0.04 16 24 H 0.05 0.84 7.63 -51.93 -0.40 0.44 16 25 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 27 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.31 8.10 -51.93 -0.42 -0.11 16 30 H 0.34 2.54 9.08 -39.29 -0.36 2.19 16 31 H 0.34 3.02 8.18 -39.29 -0.32 2.70 16 32 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 33 H 0.05 0.78 7.56 -51.93 -0.39 0.39 16 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -30.83 266.81 -8.18 -39.01 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.58 Total: -0.63 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.05 Total: -13.18 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.56 Total: -46.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.83 -8.18 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050249008.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.863 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds