Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00026 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99820 * 3 2 1 6 6 H 1.48500 * 109.47197 * 149.99999 * 3 2 1 7 7 C 1.37872 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47221 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.46903 * 179.97438 * 10 9 7 12 12 C 1.47887 * 111.01481 * 69.12508 * 11 10 9 13 13 C 1.54908 * 104.77420 * 146.33028 * 12 11 10 14 14 C 1.55138 * 101.68619 * 322.97931 * 13 12 11 15 15 H 1.09003 * 110.70516 * 277.25131 * 14 13 12 16 16 C 1.53001 * 110.70765 * 154.19455 * 14 13 12 17 17 N 1.46904 * 109.46860 * 66.45123 * 16 14 13 18 18 C 1.47444 * 110.99660 * 190.00196 * 11 10 9 19 19 H 0.97006 * 120.00548 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47245 * 59.99726 * 9 7 2 21 21 H 1.09000 * 109.47104 * 300.00242 * 9 7 2 22 22 H 1.09005 * 109.47195 * 60.00323 * 10 9 7 23 23 H 1.08994 * 109.47178 * 299.99604 * 10 9 7 24 24 H 1.08993 * 110.35657 * 27.51601 * 12 11 10 25 25 H 1.09005 * 110.40536 * 265.16436 * 12 11 10 26 26 H 1.09002 * 110.99023 * 204.86730 * 13 12 11 27 27 H 1.08995 * 110.99233 * 81.08878 * 13 12 11 28 28 H 1.09002 * 109.47311 * 186.45000 * 16 14 13 29 29 H 1.08999 * 109.47004 * 306.45274 * 16 14 13 30 30 H 1.00902 * 110.99381 * 180.02562 * 17 16 14 31 31 H 1.00900 * 110.99797 * 303.95158 * 17 16 14 32 32 H 1.08998 * 109.89066 * 117.34098 * 18 11 10 33 33 H 1.08993 * 110.02675 * 356.21988 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 0.8193 -5.1479 -1.2895 13 6 0.8626 -6.6804 -1.5118 14 6 2.2635 -7.0398 -0.9504 15 1 3.0360 -6.8609 -1.6984 16 6 2.2993 -8.4939 -0.4758 17 7 2.1507 -9.3897 -1.6306 18 6 2.4208 -6.0695 0.2392 19 1 -0.4851 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6042 0.8895 23 1 2.8720 -3.6043 -0.8905 24 1 1.3465 -4.6329 -2.0924 25 1 -0.2128 -4.8023 -1.2291 26 1 0.7928 -6.9232 -2.5722 27 1 0.0757 -7.1794 -0.9465 28 1 3.2510 -8.6918 0.0175 29 1 1.4834 -8.6672 0.2259 30 1 2.1708 -10.3566 -1.3429 31 1 1.3064 -9.1825 -2.1426 32 1 2.1494 -6.5733 1.1669 33 1 3.4505 -5.7169 0.2964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050249008.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -36.404829 kcal Electronic energy + Delta-G solvation = -12678.168922 eV Core-core repulsion = 10543.814984 eV Total energy + Delta-G solvation = -2134.353938 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.19900 -36.42384 -35.08575 -32.92352 -30.31933 -30.00375 -26.46349 -24.61438 -23.23947 -21.42625 -21.06356 -18.56488 -17.08962 -16.86920 -16.48756 -15.95895 -15.74292 -15.05820 -14.43783 -14.19343 -14.06135 -13.80388 -13.47422 -12.99397 -12.88561 -12.65004 -12.35817 -12.02469 -11.79422 -11.65769 -11.60107 -11.32374 -11.20365 -10.56807 -9.59256 -9.19011 -8.21177 -6.33355 1.39496 1.41482 1.52731 2.39732 3.12016 3.16014 3.49057 3.72423 3.76504 4.18068 4.36461 4.37085 4.46107 4.52409 4.56951 4.70045 4.81705 4.88499 4.98130 5.01581 5.10778 5.14275 5.37709 5.43586 5.62897 5.77293 6.07202 6.20234 6.26933 6.32099 6.63235 6.83701 7.36101 8.91206 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.092484 B = 0.006210 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.681757 B = 4508.031512 C = 4642.176722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.075 3.925 11 N -0.547 5.547 12 C 0.042 3.958 13 C -0.112 4.112 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.081 3.919 17 N -0.858 5.858 18 C 0.044 3.956 19 H 0.264 0.736 20 H -0.010 1.010 21 H -0.009 1.009 22 H 0.061 0.939 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.351 0.649 31 H 0.345 0.655 32 H 0.082 0.918 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 -15.866 -2.169 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.053 4.053 11 N -0.272 5.272 12 C -0.085 4.085 13 C -0.150 4.150 14 C -0.119 4.119 15 H 0.091 0.909 16 C -0.051 4.051 17 N -0.389 5.389 18 C -0.084 4.084 19 H 0.073 0.927 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.080 0.920 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.100 0.900 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.965 -15.405 -2.005 16.033 hybrid contribution -0.206 0.896 -0.108 0.926 sum 3.758 -14.510 -2.113 15.137 Atomic orbital electron populations 1.70116 1.07904 1.27847 1.51364 1.25987 0.95761 1.03409 0.94481 0.85400 0.78639 0.78155 0.78552 1.19675 1.20566 1.18666 1.21632 0.93514 0.92319 1.51110 0.92205 1.18878 0.94178 0.92060 0.94870 1.22173 0.95286 0.88988 0.98807 1.63565 1.28704 1.02249 1.32636 1.22992 0.98781 0.97161 0.89592 1.22724 0.96988 0.93277 1.01985 1.22336 0.97533 0.95077 0.96986 0.90866 1.21622 1.01126 0.90425 0.91881 1.58691 1.46091 1.08089 1.26021 1.22897 0.95248 0.91125 0.99107 0.92695 0.99121 0.99085 0.92020 0.96182 0.94979 0.92111 0.89289 0.90265 0.90570 0.94654 0.83520 0.84175 0.90024 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -32.27 9.11 25.60 0.23 -32.03 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.11 5.02 29.85 0.15 2.26 16 10 C 0.08 3.38 4.51 86.30 0.39 3.77 16 11 N -0.55 -20.93 5.16 -885.42 -4.57 -25.50 16 12 C 0.04 1.49 5.79 86.77 0.50 1.99 16 13 C -0.11 -2.76 5.71 31.98 0.18 -2.58 16 14 C -0.10 -2.38 3.19 -9.61 -0.03 -2.41 16 15 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.08 1.49 6.15 86.30 0.53 2.02 16 17 N -0.86 -13.82 9.62 -186.71 -1.80 -15.62 16 18 C 0.04 1.30 6.46 86.65 0.56 1.86 16 19 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 20 H -0.01 -0.58 7.49 -2.39 -0.02 -0.59 16 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 22 H 0.06 2.70 8.03 -2.38 -0.02 2.68 16 23 H 0.02 0.89 7.85 -2.39 -0.02 0.87 16 24 H 0.03 1.19 7.63 -2.39 -0.02 1.18 16 25 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 26 H 0.09 1.88 8.10 -2.39 -0.02 1.86 16 27 H 0.08 1.82 8.02 -2.39 -0.02 1.80 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 30 H 0.35 4.23 9.08 -89.69 -0.81 3.41 16 31 H 0.35 5.07 8.18 -89.69 -0.73 4.34 16 32 H 0.08 2.20 7.83 -2.39 -0.02 2.18 16 33 H 0.05 1.52 7.56 -2.39 -0.02 1.50 16 Total: -1.00 -66.66 266.81 -1.54 -68.21 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -0.47 Total: 8.36 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 2.98 Total: -24.58 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -6.08 Total: -99.03 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -66.66 -1.54 -68.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050249008.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.801 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds