Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47446 * 2 1 4 4 C 1.50698 * 109.47077 * 120.00045 * 2 1 3 5 5 H 1.07997 * 120.00248 * 119.99592 * 4 2 1 6 6 C 1.37879 * 119.99751 * 299.72367 * 4 2 1 7 7 N 1.31510 * 120.00325 * 0.27254 * 6 4 2 8 8 Si 1.86803 * 119.99862 * 180.27483 * 6 4 2 9 9 H 1.48505 * 109.47084 * 90.00013 * 8 6 4 10 10 H 1.48507 * 109.47100 * 209.99723 * 8 6 4 11 11 H 1.48496 * 109.47258 * 329.99862 * 8 6 4 12 12 N 1.46902 * 109.47399 * 239.99958 * 2 1 3 13 13 C 1.46962 * 110.99414 * 297.97135 * 12 2 1 14 14 C 1.53055 * 109.36126 * 176.80563 * 13 12 2 15 15 N 1.46959 * 109.35956 * 58.40503 * 14 13 12 16 16 C 1.46956 * 110.88296 * 300.67589 * 15 14 13 17 17 C 1.46955 * 111.00474 * 174.17472 * 12 2 1 18 18 H 1.08998 * 109.49050 * 63.21827 * 17 12 2 19 19 C 1.52998 * 109.48701 * 303.15709 * 17 12 2 20 20 H 1.09004 * 109.46850 * 66.48136 * 1 2 3 21 21 H 1.08995 * 109.47363 * 186.48537 * 1 2 3 22 22 H 1.09003 * 109.46895 * 306.49052 * 1 2 3 23 23 H 0.97003 * 120.00256 * 180.02562 * 7 6 4 24 24 H 1.08992 * 109.49438 * 296.77596 * 13 12 2 25 25 H 1.09003 * 109.48837 * 56.84498 * 13 12 2 26 26 H 1.08998 * 109.49206 * 298.43633 * 14 13 12 27 27 H 1.09004 * 109.49020 * 178.36655 * 14 13 12 28 28 H 1.00900 * 111.00060 * 64.54427 * 15 14 13 29 29 H 1.09004 * 109.48762 * 299.35604 * 16 15 14 30 30 H 1.09000 * 109.50782 * 179.30155 * 16 15 14 31 31 H 1.08996 * 109.47415 * 66.59083 * 19 17 12 32 32 H 1.09004 * 109.46977 * 186.59651 * 19 17 12 33 33 H 1.09001 * 109.46799 * 306.59325 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.7038 -0.2360 2.4827 7 7 0.9478 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.6423 -0.5355 4.4054 10 1 1.3589 -0.9386 5.1155 11 1 2.4972 -2.5587 3.7155 12 7 2.0197 -0.6925 -1.1994 13 6 1.5885 -2.0974 -1.2092 14 6 2.0498 -2.7607 -2.5092 15 7 3.5122 -2.6609 -2.6148 16 6 3.9434 -1.2560 -2.6049 17 6 3.4820 -0.5927 -1.3051 18 1 3.9432 -1.0970 -0.4559 19 6 3.8941 0.8807 -1.3096 20 1 -0.3633 0.4101 -0.9423 21 1 -0.3634 -1.0210 0.1161 22 1 -0.3633 0.6112 0.8262 23 1 0.7171 1.1673 3.4844 24 1 2.0281 -2.6187 -0.3590 25 1 0.5015 -2.1447 -1.1427 26 1 1.5885 -2.2565 -3.3583 27 1 1.7563 -3.8105 -2.5059 28 1 3.9643 -3.1830 -1.8793 29 1 3.5036 -0.7347 -3.4552 30 1 5.0303 -1.2084 -2.6716 31 1 3.6689 1.3240 -0.3397 32 1 4.9636 0.9583 -1.5052 33 1 3.3432 1.4096 -2.0874 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054374506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 2.428382 kcal Electronic energy + Delta-G solvation = -13701.532199 eV Core-core repulsion = 11568.862195 eV Total energy + Delta-G solvation = -2132.670004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.81408 -34.74270 -32.40640 -31.68187 -28.70578 -26.42963 -25.21876 -24.14356 -21.38649 -20.42495 -19.09143 -16.29851 -15.52740 -14.76824 -14.58023 -14.19805 -13.89409 -13.41031 -12.85606 -12.30369 -11.49828 -11.46660 -11.34981 -11.26647 -11.17447 -10.95552 -10.67095 -10.55711 -10.30719 -10.18074 -9.86955 -9.71071 -9.15655 -8.41159 -7.90636 -7.13107 -6.01781 -4.13953 3.23437 3.30999 3.33376 4.36825 4.71586 4.94276 5.24019 5.59367 5.75763 5.79197 5.84335 5.96660 6.07870 6.19756 6.35716 6.40073 6.48936 6.74259 6.87902 6.89119 6.94740 7.04049 7.19973 7.37697 7.56656 7.68681 7.73062 7.96221 8.14750 8.31694 8.42963 8.95389 9.53368 10.98767 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.012198 C = 0.012001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.484679 B = 2294.974990 C = 2332.633300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.203 3.797 3 H 0.045 0.955 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.529 5.529 13 C 0.024 3.976 14 C 0.057 3.943 15 N -0.690 5.690 16 C 0.063 3.937 17 C 0.052 3.948 18 H 0.041 0.959 19 C -0.136 4.136 20 H 0.014 0.986 21 H 0.026 0.974 22 H 0.079 0.921 23 H 0.261 0.739 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.333 0.667 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 -3.360 -6.532 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H 0.063 0.937 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.254 5.254 13 C -0.106 4.106 14 C -0.073 4.073 15 N -0.318 5.318 16 C -0.067 4.067 17 C -0.059 4.059 18 H 0.059 0.941 19 C -0.195 4.195 20 H 0.033 0.967 21 H 0.045 0.955 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.947 -3.061 -7.518 8.636 hybrid contribution 0.477 -0.619 2.796 2.903 sum 3.423 -3.680 -4.723 6.897 Atomic orbital electron populations 1.21766 0.97894 0.99741 0.99165 1.19348 0.92143 0.94561 0.84303 0.93698 1.21652 1.31816 1.12680 0.91777 0.92962 1.24898 0.94854 0.94849 0.98808 1.69891 1.36457 1.22690 1.23422 0.86693 0.78706 0.80050 0.83127 1.20723 1.21141 1.20143 1.62687 1.08645 1.11992 1.42086 1.22618 1.01108 0.90680 0.96172 1.22136 0.87834 0.99476 0.97892 1.60880 1.07211 1.11940 1.51744 1.22162 0.98969 0.88014 0.97554 1.22090 0.90534 0.96736 0.96523 0.94111 1.21723 0.99010 0.95955 1.02769 0.96672 0.95510 0.90240 0.92920 0.94539 0.90961 0.90938 0.91520 0.85060 0.90882 0.91533 0.91511 0.93719 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.51 37.15 0.32 -2.79 16 2 C 0.20 5.02 2.04 -68.87 -0.14 4.88 16 3 H 0.05 1.21 6.08 -51.93 -0.32 0.90 16 4 C -0.54 -14.42 7.13 -34.44 -0.25 -14.67 16 5 H 0.05 1.42 5.80 -52.49 -0.30 1.11 16 6 C 0.07 1.86 5.31 -17.82 -0.09 1.77 16 7 N -0.89 -24.97 11.40 55.43 0.63 -24.33 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.53 -11.24 4.51 -219.95 -0.99 -12.24 16 13 C 0.02 0.48 4.95 -3.76 -0.02 0.46 16 14 C 0.06 0.92 6.72 -3.76 -0.03 0.89 16 15 N -0.69 -10.96 6.91 -113.63 -0.79 -11.74 16 16 C 0.06 1.02 6.00 -3.77 -0.02 1.00 16 17 C 0.05 1.00 2.27 -67.66 -0.15 0.84 16 18 H 0.04 0.88 6.94 -51.93 -0.36 0.52 16 19 C -0.14 -2.49 8.65 37.16 0.32 -2.17 16 20 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 21 H 0.03 0.63 6.72 -51.93 -0.35 0.28 16 22 H 0.08 2.11 6.28 -51.93 -0.33 1.78 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.04 0.79 6.46 -51.93 -0.34 0.45 16 25 H 0.07 1.45 6.34 -51.93 -0.33 1.13 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.33 5.10 8.89 -39.29 -0.35 4.75 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 250.68 15.07 3.78 3.78 Total: -1.00 -27.48 250.68 -7.56 -35.03 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.11 Total: 3.13 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.06 Total: -9.79 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.14 Total: -48.31 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.48 -7.56 -35.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054374506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.462 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds