Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 N 1.46897 * 109.46882 * 120.00444 * 2 1 3 5 5 C 1.53006 * 109.46946 * 240.00310 * 2 1 3 6 6 H 1.09001 * 109.58082 * 182.92629 * 5 2 1 7 7 C 1.53193 * 109.70127 * 303.28835 * 5 2 1 8 8 C 1.53036 * 109.31341 * 174.50761 * 7 5 2 9 9 C 1.53038 * 109.52767 * 298.62024 * 8 7 5 10 10 C 1.53192 * 109.31697 * 61.36947 * 9 8 7 11 11 N 1.46918 * 109.59038 * 62.63924 * 5 2 1 12 12 C 1.36935 * 120.63102 * 6.48255 * 11 5 2 13 13 H 1.08009 * 119.99936 * 33.97912 * 12 11 5 14 14 C 1.38808 * 120.00424 * 213.98214 * 12 11 5 15 15 N 1.31621 * 119.99936 * 15.78676 * 14 12 11 16 16 Si 1.86796 * 120.00367 * 195.78519 * 14 12 11 17 17 H 1.48504 * 109.47361 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47375 * 120.00109 * 16 14 12 19 19 H 1.48504 * 109.47169 * 239.99978 * 16 14 12 20 20 H 1.08995 * 109.46980 * 186.13260 * 1 2 3 21 21 H 1.08990 * 109.46964 * 306.13559 * 1 2 3 22 22 H 1.08999 * 109.46677 * 66.13727 * 1 2 3 23 23 H 1.00900 * 110.99877 * 176.04539 * 4 2 1 24 24 H 1.00907 * 110.99870 * 299.99594 * 4 2 1 25 25 H 1.09000 * 109.50878 * 54.55305 * 7 5 2 26 26 H 1.09001 * 109.49061 * 294.45643 * 7 5 2 27 27 H 1.08997 * 109.46237 * 178.60227 * 8 7 5 28 28 H 1.09005 * 109.45858 * 58.63146 * 8 7 5 29 29 H 1.09007 * 109.49826 * 181.32305 * 9 8 7 30 30 H 1.09003 * 109.49774 * 301.41738 * 9 8 7 31 31 H 1.08995 * 109.58573 * 65.15049 * 10 9 8 32 32 H 1.08988 * 109.59029 * 185.43837 * 10 9 8 33 33 H 0.97000 * 120.00379 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 3.1288 -0.7679 -1.2253 7 6 1.4659 -2.1407 -1.2968 8 6 1.8691 -2.8060 -2.6146 9 6 1.2897 -2.0113 -3.7872 10 6 1.8616 -0.5903 -3.7681 11 7 1.6045 0.0052 -2.4498 12 6 0.9713 1.2146 -2.3421 13 1 1.2385 1.8952 -1.5471 14 6 -0.0140 1.5659 -3.2545 15 7 -0.5601 0.6453 -4.0204 16 14 -0.5651 3.3452 -3.3953 17 1 0.1976 4.1775 -2.4305 18 1 -0.3158 3.8329 -4.7757 19 1 -2.0156 3.4397 -3.0914 20 1 -0.3633 -1.0217 0.1098 21 1 -0.3633 0.6060 0.8299 22 1 -0.3632 0.4157 -0.9398 23 1 3.0262 -0.7627 1.1909 24 1 1.6962 -0.2350 2.0385 25 1 0.3788 -2.0961 -1.2295 26 1 1.8590 -2.7201 -0.4614 27 1 1.4827 -3.8249 -2.6402 28 1 2.9561 -2.8278 -2.6927 29 1 1.5574 -2.4987 -4.7247 30 1 0.2043 -1.9679 -3.6962 31 1 2.9357 -0.6263 -3.9496 32 1 1.3802 0.0078 -4.5417 33 1 -1.2484 0.8908 -4.6583 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063195909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = 11.921386 kcal Electronic energy + Delta-G solvation = -13897.836720 eV Core-core repulsion = 11765.578364 eV Total energy + Delta-G solvation = -2132.258357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.13943 -34.48147 -32.95809 -30.28197 -29.30979 -27.38293 -25.23723 -22.79735 -21.80216 -19.60855 -18.45773 -16.46196 -15.40157 -14.62738 -14.20080 -13.98707 -13.76449 -13.13714 -12.93714 -12.11542 -11.86471 -11.31031 -11.21337 -11.10587 -10.85357 -10.59080 -10.52617 -10.23101 -10.13203 -9.69888 -9.63448 -9.21708 -9.18994 -8.32206 -8.01467 -6.46049 -5.74718 -3.23596 3.35980 3.45076 3.46078 4.49156 5.05111 5.38439 5.67299 5.80382 5.88011 6.01739 6.08681 6.20694 6.38144 6.58780 6.63875 6.67789 6.81100 6.86498 6.93866 7.01813 7.09227 7.15552 7.31099 7.58105 7.64016 7.76406 7.80099 7.82847 7.98254 8.53400 9.25124 9.87328 10.48594 11.29146 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.016713 C = 0.012310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.580343 B = 1674.970604 C = 2273.955098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.098 3.902 3 H 0.033 0.967 4 N -0.849 5.849 5 C 0.182 3.818 6 H 0.017 0.983 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.125 4.125 10 C 0.164 3.836 11 N -0.585 5.585 12 C -0.244 4.244 13 H 0.063 0.937 14 C 0.006 3.994 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 H 0.045 0.955 21 H 0.023 0.977 22 H 0.111 0.889 23 H 0.330 0.670 24 H 0.331 0.669 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.073 0.927 31 H -0.005 1.005 32 H 0.090 0.910 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 -2.622 4.598 6.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 H 0.051 0.949 4 N -0.378 5.378 5 C 0.075 3.925 6 H 0.035 0.965 7 C -0.158 4.158 8 C -0.151 4.151 9 C -0.164 4.164 10 C 0.038 3.962 11 N -0.309 5.309 12 C -0.374 4.374 13 H 0.081 0.919 14 C -0.194 4.194 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 H 0.064 0.936 21 H 0.042 0.958 22 H 0.130 0.870 23 H 0.141 0.859 24 H 0.142 0.858 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.012 0.988 32 H 0.108 0.892 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.050 -3.205 4.198 6.099 hybrid contribution 0.110 1.718 0.099 1.725 sum 3.160 -1.487 4.297 5.537 Atomic orbital electron populations 1.22098 0.94055 1.00606 1.03773 1.21304 0.96569 0.94419 0.88899 0.94946 1.58829 1.15130 1.59261 1.04595 1.20417 0.94456 0.90680 0.86960 0.96549 1.21929 1.01396 0.97140 0.95382 1.21481 0.99070 0.97641 0.96918 1.21871 1.02198 0.97408 0.94950 1.20782 0.93734 0.92358 0.89315 1.44099 1.67657 1.19976 0.99211 1.19005 1.12761 0.92032 1.13594 0.91942 1.25133 0.96256 0.97174 1.00823 1.69999 1.26971 1.30899 1.25550 0.86361 0.78162 0.85504 0.77601 1.20334 1.21620 1.21721 0.93572 0.95755 0.87035 0.85863 0.85754 0.91933 0.93191 0.94269 0.93908 0.94683 0.90842 0.98754 0.89180 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.53 37.16 0.32 -2.78 16 2 C 0.10 1.95 2.67 -67.71 -0.18 1.77 16 3 H 0.03 0.69 6.79 -51.93 -0.35 0.33 16 4 N -0.85 -13.62 8.75 -4.66 -0.04 -13.66 16 5 C 0.18 3.91 2.81 -67.60 -0.19 3.72 16 6 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 7 C -0.12 -2.43 4.90 -26.61 -0.13 -2.56 16 8 C -0.11 -2.22 5.88 -26.69 -0.16 -2.38 16 9 C -0.13 -2.74 6.08 -26.61 -0.16 -2.90 16 10 C 0.16 3.95 5.66 -3.71 -0.02 3.92 16 11 N -0.59 -14.41 2.90 -164.78 -0.48 -14.89 16 12 C -0.24 -6.38 6.04 -15.06 -0.09 -6.47 16 13 H 0.06 1.64 6.33 -52.48 -0.33 1.31 16 14 C 0.01 0.15 4.76 -17.43 -0.08 0.07 16 15 N -0.89 -24.68 11.26 55.49 0.62 -24.06 16 16 Si 0.89 21.19 29.58 -169.99 -5.03 16.16 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H 0.05 0.96 6.63 -51.93 -0.34 0.61 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.11 2.75 5.14 -51.93 -0.27 2.49 16 23 H 0.33 4.77 8.99 -39.29 -0.35 4.42 16 24 H 0.33 4.67 9.04 -39.29 -0.36 4.32 16 25 H 0.06 1.40 6.24 -51.93 -0.32 1.08 16 26 H 0.05 0.95 7.88 -51.93 -0.41 0.54 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.07 1.80 8.11 -51.93 -0.42 1.38 16 31 H -0.01 -0.13 8.14 -51.93 -0.42 -0.55 16 32 H 0.09 2.40 5.81 -51.94 -0.30 2.10 16 33 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 249.27 15.07 3.76 3.76 Total: -1.00 -27.10 249.27 -7.00 -34.10 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.13 Total: 6.21 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.70 Total: -7.61 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.11 Total: -52.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.10 -7.00 -34.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063195909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.020 kcal (2) G-P(sol) polarization free energy of solvation -27.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds