Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 N 1.46897 * 109.46882 * 120.00444 * 2 1 3 5 5 C 1.53006 * 109.46946 * 240.00310 * 2 1 3 6 6 H 1.09001 * 109.58082 * 182.92629 * 5 2 1 7 7 C 1.53193 * 109.70127 * 303.28835 * 5 2 1 8 8 C 1.53036 * 109.31341 * 174.50761 * 7 5 2 9 9 C 1.53038 * 109.52767 * 298.62024 * 8 7 5 10 10 C 1.53192 * 109.31697 * 61.36947 * 9 8 7 11 11 N 1.46918 * 109.59038 * 62.63924 * 5 2 1 12 12 C 1.36935 * 120.63102 * 6.48255 * 11 5 2 13 13 H 1.08009 * 119.99936 * 33.97912 * 12 11 5 14 14 C 1.38808 * 120.00424 * 213.98214 * 12 11 5 15 15 N 1.31621 * 119.99936 * 15.78676 * 14 12 11 16 16 Si 1.86796 * 120.00367 * 195.78519 * 14 12 11 17 17 H 1.48504 * 109.47361 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47375 * 120.00109 * 16 14 12 19 19 H 1.48504 * 109.47169 * 239.99978 * 16 14 12 20 20 H 1.08995 * 109.46980 * 186.13260 * 1 2 3 21 21 H 1.08990 * 109.46964 * 306.13559 * 1 2 3 22 22 H 1.08999 * 109.46677 * 66.13727 * 1 2 3 23 23 H 1.00900 * 110.99877 * 176.04539 * 4 2 1 24 24 H 1.00907 * 110.99870 * 299.99594 * 4 2 1 25 25 H 1.09000 * 109.50878 * 54.55305 * 7 5 2 26 26 H 1.09001 * 109.49061 * 294.45643 * 7 5 2 27 27 H 1.08997 * 109.46237 * 178.60227 * 8 7 5 28 28 H 1.09005 * 109.45858 * 58.63146 * 8 7 5 29 29 H 1.09007 * 109.49826 * 181.32305 * 9 8 7 30 30 H 1.09003 * 109.49774 * 301.41738 * 9 8 7 31 31 H 1.08995 * 109.58573 * 65.15049 * 10 9 8 32 32 H 1.08988 * 109.59029 * 185.43837 * 10 9 8 33 33 H 0.97000 * 120.00379 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 3.1288 -0.7679 -1.2253 7 6 1.4659 -2.1407 -1.2968 8 6 1.8691 -2.8060 -2.6146 9 6 1.2897 -2.0113 -3.7872 10 6 1.8616 -0.5903 -3.7681 11 7 1.6045 0.0052 -2.4498 12 6 0.9713 1.2146 -2.3421 13 1 1.2385 1.8952 -1.5471 14 6 -0.0140 1.5659 -3.2545 15 7 -0.5601 0.6453 -4.0204 16 14 -0.5651 3.3452 -3.3953 17 1 0.1976 4.1775 -2.4305 18 1 -0.3158 3.8329 -4.7757 19 1 -2.0156 3.4397 -3.0914 20 1 -0.3633 -1.0217 0.1098 21 1 -0.3633 0.6060 0.8299 22 1 -0.3632 0.4157 -0.9398 23 1 3.0262 -0.7627 1.1909 24 1 1.6962 -0.2350 2.0385 25 1 0.3788 -2.0961 -1.2295 26 1 1.8590 -2.7201 -0.4614 27 1 1.4827 -3.8249 -2.6402 28 1 2.9561 -2.8278 -2.6927 29 1 1.5574 -2.4987 -4.7247 30 1 0.2043 -1.9679 -3.6962 31 1 2.9357 -0.6263 -3.9496 32 1 1.3802 0.0078 -4.5417 33 1 -1.2484 0.8908 -4.6583 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063195909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = -6.049096 kcal Electronic energy + Delta-G solvation = -13898.615979 eV Core-core repulsion = 11765.578364 eV Total energy + Delta-G solvation = -2133.037615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.87362 -36.09583 -34.84202 -32.12862 -30.98306 -29.03678 -27.14751 -24.50648 -23.65302 -21.29163 -20.23535 -18.34508 -17.12997 -16.21683 -15.96050 -15.69710 -15.49228 -14.81780 -14.75784 -13.87484 -13.60036 -13.11412 -12.99036 -12.84362 -12.69353 -12.38928 -12.22042 -12.11533 -12.01020 -11.45773 -11.34585 -10.98412 -10.91187 -10.29759 -9.43301 -8.41725 -7.76158 -5.26733 1.45477 1.49677 1.57158 2.54208 3.35638 3.50180 4.05601 4.15593 4.23653 4.34431 4.44621 4.55783 4.69399 4.85879 4.94921 5.00811 5.12263 5.16588 5.28828 5.36594 5.42843 5.46196 5.57665 5.71478 5.78219 5.85593 5.96162 6.36440 6.52562 6.76661 7.24856 7.93841 8.49881 9.25871 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.016713 C = 0.012310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.580343 B = 1674.970604 C = 2273.955098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.108 3.892 3 H 0.018 0.982 4 N -0.839 5.839 5 C 0.175 3.825 6 H 0.023 0.977 7 C -0.110 4.110 8 C -0.109 4.109 9 C -0.116 4.116 10 C 0.161 3.839 11 N -0.599 5.599 12 C -0.238 4.238 13 H 0.060 0.940 14 C -0.040 4.040 15 N -0.917 5.917 16 Si 0.948 3.052 17 H -0.271 1.271 18 H -0.294 1.294 19 H -0.294 1.294 20 H 0.043 0.957 21 H 0.041 0.959 22 H 0.072 0.928 23 H 0.344 0.656 24 H 0.346 0.654 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.004 0.996 32 H 0.059 0.941 33 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -3.177 5.852 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 H 0.036 0.964 4 N -0.371 5.371 5 C 0.069 3.931 6 H 0.041 0.959 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.155 4.155 10 C 0.036 3.964 11 N -0.324 5.324 12 C -0.369 4.369 13 H 0.077 0.923 14 C -0.236 4.236 15 N -0.562 5.562 16 Si 0.778 3.222 17 H -0.195 1.195 18 H -0.221 1.221 19 H -0.222 1.222 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.091 0.909 23 H 0.156 0.844 24 H 0.159 0.841 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.100 -3.762 5.482 7.811 hybrid contribution -0.160 1.867 -0.247 1.890 sum 3.941 -1.895 5.235 6.821 Atomic orbital electron populations 1.21906 0.95034 1.00408 1.02307 1.21047 0.95628 0.93776 0.89842 0.96406 1.58682 1.16209 1.58465 1.03743 1.20578 0.94713 0.91295 0.86491 0.95912 1.21811 0.99729 0.96690 0.96685 1.21453 0.99897 0.98150 0.95138 1.21715 0.99955 0.96704 0.97154 1.20726 0.93925 0.93202 0.88595 1.44290 1.67564 1.20127 1.00387 1.19111 1.12110 0.92713 1.12955 0.92265 1.25688 0.96789 0.99974 1.01183 1.70133 1.27615 1.32155 1.26288 0.85503 0.77397 0.82165 0.77177 1.19513 1.22120 1.22158 0.93781 0.93951 0.90943 0.84361 0.84090 0.94386 0.91151 0.92106 0.92345 0.92868 0.94199 0.97782 0.92261 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 8.53 71.98 0.61 -5.08 16 2 C 0.11 4.10 2.67 44.92 0.12 4.22 16 3 H 0.02 0.73 6.79 -2.39 -0.02 0.72 16 4 N -0.84 -24.38 8.75 -168.67 -1.48 -25.85 16 5 C 0.18 7.26 2.81 44.98 0.13 7.39 16 6 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 7 C -0.11 -4.26 4.90 30.67 0.15 -4.11 16 8 C -0.11 -3.99 5.88 30.62 0.18 -3.81 16 9 C -0.12 -4.99 6.08 30.67 0.19 -4.81 16 10 C 0.16 7.76 5.66 86.36 0.49 8.25 16 11 N -0.60 -29.36 2.90 -675.25 -1.96 -31.32 16 12 C -0.24 -12.52 6.04 84.03 0.51 -12.01 16 13 H 0.06 3.11 6.33 -2.91 -0.02 3.10 16 14 C -0.04 -2.15 4.76 84.86 0.40 -1.74 16 15 N -0.92 -52.14 11.26 21.65 0.24 -51.89 16 16 Si 0.95 44.16 29.58 68.60 2.03 46.18 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 H 0.04 1.79 6.63 -2.39 -0.02 1.77 16 21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.07 3.60 5.14 -2.39 -0.01 3.58 16 23 H 0.34 8.74 8.99 -89.69 -0.81 7.93 16 24 H 0.35 8.62 9.04 -89.69 -0.81 7.81 16 25 H 0.04 1.66 6.24 -2.39 -0.01 1.64 16 26 H 0.07 2.44 7.88 -2.39 -0.02 2.42 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.06 3.23 5.81 -2.39 -0.01 3.22 16 33 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -57.63 249.27 1.10 -56.53 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.51 Total: 18.06 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 2.78 Total: -11.72 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.19 Total: -109.06 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -57.63 1.10 -56.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063195909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.481 kcal (2) G-P(sol) polarization free energy of solvation -57.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds