Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50615 * 2 1 4 4 C 1.53042 * 109.49015 * 120.05809 * 2 1 3 5 5 N 1.46956 * 109.36800 * 61.56521 * 4 2 1 6 6 C 1.46962 * 110.88000 * 59.31853 * 5 4 2 7 7 C 1.53051 * 109.36033 * 300.68331 * 6 5 4 8 8 H 1.09001 * 109.49212 * 298.43030 * 7 6 5 9 9 C 1.53004 * 109.50188 * 178.37813 * 7 6 5 10 10 N 1.46957 * 109.36934 * 58.40493 * 7 6 5 11 11 C 1.46899 * 111.00260 * 176.81132 * 10 7 6 12 12 C 1.50696 * 109.46898 * 176.05926 * 11 10 7 13 13 H 1.07998 * 120.00518 * 5.26503 * 12 11 10 14 14 C 1.37878 * 119.99505 * 185.53565 * 12 11 10 15 15 N 1.31513 * 120.00430 * 359.72786 * 14 12 11 16 16 Si 1.86807 * 119.99909 * 179.72122 * 14 12 11 17 17 H 1.48502 * 109.46722 * 60.00278 * 16 14 12 18 18 H 1.48499 * 109.47251 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47152 * 300.00833 * 16 14 12 20 20 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47053 * 300.05339 * 1 2 3 22 22 H 1.09003 * 109.47369 * 60.04864 * 1 2 3 23 23 H 1.09006 * 109.48738 * 301.59644 * 4 2 1 24 24 H 1.09003 * 109.50810 * 181.54120 * 4 2 1 25 25 H 1.00896 * 111.00120 * 183.18631 * 5 4 2 26 26 H 1.08994 * 109.48971 * 180.71565 * 6 5 4 27 27 H 1.08994 * 109.48573 * 60.64453 * 6 5 4 28 28 H 1.08999 * 109.47459 * 300.09509 * 9 7 6 29 29 H 1.09004 * 109.47455 * 60.09742 * 9 7 6 30 30 H 1.08997 * 109.47129 * 180.09855 * 9 7 6 31 31 H 1.09001 * 109.47226 * 56.05367 * 11 10 7 32 32 H 1.09004 * 109.46259 * 296.05534 * 11 10 7 33 33 H 0.97004 * 120.00335 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 1.2487 5 7 1.5809 -2.1183 1.2263 6 6 2.0711 -2.8121 0.0271 7 6 1.5604 -2.0893 -1.2216 8 1 0.4708 -2.1131 -1.2354 9 6 2.1021 -2.7852 -2.4719 10 7 2.0202 -0.6937 -1.1992 11 6 1.6133 0.0143 -2.4203 12 6 2.0166 1.4628 -2.3191 13 1 2.5986 1.8037 -1.4757 14 6 1.6378 2.3539 -3.3006 15 7 0.9292 1.9389 -4.3278 16 14 2.1311 4.1510 -3.1713 17 1 3.6121 4.2569 -3.1427 18 1 1.6038 4.8947 -4.3435 19 1 1.5694 4.7301 -1.9246 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5146 0.8895 22 1 -0.3634 0.5131 -0.8904 23 1 1.6544 -0.2267 2.1393 24 1 3.1303 -0.6989 1.2629 25 1 1.8604 -2.6045 2.0651 26 1 1.7072 -3.8394 0.0271 27 1 3.1611 -2.8120 0.0271 28 1 3.1918 -2.7620 -2.4575 29 1 1.7610 -3.8203 -2.4883 30 1 1.7395 -2.2691 -3.3608 31 1 0.5317 -0.0545 -2.5369 32 1 2.1013 -0.4394 -3.2830 33 1 0.6624 2.5660 -5.0182 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068914836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = 5.500162 kcal Electronic energy + Delta-G solvation = -13592.503337 eV Core-core repulsion = 11459.966535 eV Total energy + Delta-G solvation = -2132.536802 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.98146 -34.27105 -32.68372 -32.14809 -28.40976 -26.27133 -26.13896 -24.03066 -21.38612 -21.09731 -17.85754 -16.26541 -16.05628 -14.85690 -14.61494 -14.14790 -13.96081 -13.38553 -13.03875 -12.42582 -11.95478 -11.71003 -11.65971 -11.30435 -11.07249 -10.91815 -10.69397 -10.68860 -10.42361 -10.07037 -9.84306 -9.50449 -8.98597 -8.42087 -8.10306 -7.06058 -6.00896 -4.01807 3.33837 3.38027 3.40664 4.43834 4.58429 4.94972 5.34454 5.41908 5.60194 5.67442 5.82873 5.89082 6.00787 6.09732 6.15210 6.26639 6.34998 6.42419 6.65236 6.68509 6.78214 6.92017 7.09649 7.30693 7.47629 7.54981 7.66590 7.82283 8.14173 8.29952 8.64377 9.06016 9.62167 11.10079 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045374 B = 0.011321 C = 0.009958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.946139 B = 2472.638815 C = 2811.001077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.095 0.905 4 C 0.062 3.938 5 N -0.689 5.689 6 C 0.068 3.932 7 C 0.077 3.923 8 H 0.042 0.958 9 C -0.143 4.143 10 N -0.530 5.530 11 C 0.191 3.809 12 C -0.510 4.510 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 H 0.055 0.945 21 H 0.040 0.960 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.031 0.969 25 H 0.332 0.668 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.065 0.935 31 H -0.002 1.002 32 H 0.031 0.969 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -6.827 8.063 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 H 0.113 0.887 4 C -0.067 4.067 5 N -0.320 5.320 6 C -0.062 4.062 7 C -0.032 4.032 8 H 0.060 0.940 9 C -0.201 4.201 10 N -0.256 5.256 11 C 0.066 3.934 12 C -0.549 4.549 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.148 0.852 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.016 0.984 32 H 0.049 0.951 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.948 -6.608 7.615 10.127 hybrid contribution 0.259 0.914 0.148 0.962 sum 1.207 -5.693 7.763 9.703 Atomic orbital electron populations 1.22215 0.97866 1.01345 1.01255 1.21610 0.93028 0.98464 0.88812 0.88745 1.22109 0.97307 0.88689 0.98623 1.60497 1.63768 1.03274 1.04424 1.22012 0.97326 0.96530 0.90346 1.21579 0.97434 0.90801 0.93419 0.94036 1.21823 1.01442 0.98684 0.98132 1.62500 1.58875 1.00120 1.04057 1.19739 0.94333 0.92980 0.86352 1.21165 1.33425 0.92942 1.07365 0.92030 1.24965 0.95226 0.98848 0.95371 1.69947 1.37784 1.35060 1.10857 0.86618 0.78889 0.84861 0.77394 1.20221 1.21377 1.20289 0.92649 0.94039 0.91942 0.91402 0.95042 0.85206 0.91554 0.94916 0.92465 0.93461 0.91614 0.98448 0.95148 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 8.37 37.16 0.31 -3.04 16 2 C 0.09 1.82 2.62 -67.66 -0.18 1.65 16 3 H 0.09 2.09 6.01 -51.93 -0.31 1.78 16 4 C 0.06 1.03 6.15 -3.77 -0.02 1.01 16 5 N -0.69 -10.47 6.22 -113.64 -0.71 -11.18 16 6 C 0.07 1.06 6.00 -3.76 -0.02 1.04 16 7 C 0.08 1.45 2.18 -67.65 -0.15 1.31 16 8 H 0.04 0.84 6.35 -51.93 -0.33 0.51 16 9 C -0.14 -2.49 8.86 37.16 0.33 -2.16 16 10 N -0.53 -11.64 4.58 -219.99 -1.01 -12.65 16 11 C 0.19 4.97 3.75 -4.98 -0.02 4.96 16 12 C -0.51 -14.24 8.31 -34.44 -0.29 -14.53 16 13 H 0.06 1.70 6.36 -52.49 -0.33 1.36 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.05 1.08 5.94 -51.93 -0.31 0.78 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.06 1.43 6.65 -51.93 -0.35 1.08 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.33 4.10 8.90 -39.29 -0.35 3.75 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.28 6.45 -51.93 -0.33 0.94 16 31 H 0.00 -0.06 6.79 -51.93 -0.35 -0.42 16 32 H 0.03 0.85 6.48 -51.93 -0.34 0.51 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 251.87 15.07 3.80 3.80 Total: -1.00 -29.33 251.87 -7.43 -36.76 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.10 Total: 0.79 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.13 Total: -8.25 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.98 Total: -49.74 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.33 -7.43 -36.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068914836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.258 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds