Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50615 * 2 1 4 4 C 1.53042 * 109.49015 * 120.05809 * 2 1 3 5 5 N 1.46956 * 109.36800 * 61.56521 * 4 2 1 6 6 C 1.46962 * 110.88000 * 59.31853 * 5 4 2 7 7 C 1.53051 * 109.36033 * 300.68331 * 6 5 4 8 8 H 1.09001 * 109.49212 * 298.43030 * 7 6 5 9 9 C 1.53004 * 109.50188 * 178.37813 * 7 6 5 10 10 N 1.46957 * 109.36934 * 58.40493 * 7 6 5 11 11 C 1.46899 * 111.00260 * 176.81132 * 10 7 6 12 12 C 1.50696 * 109.46898 * 176.05926 * 11 10 7 13 13 H 1.07998 * 120.00518 * 5.26503 * 12 11 10 14 14 C 1.37878 * 119.99505 * 185.53565 * 12 11 10 15 15 N 1.31513 * 120.00430 * 359.72786 * 14 12 11 16 16 Si 1.86807 * 119.99909 * 179.72122 * 14 12 11 17 17 H 1.48502 * 109.46722 * 60.00278 * 16 14 12 18 18 H 1.48499 * 109.47251 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47152 * 300.00833 * 16 14 12 20 20 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47053 * 300.05339 * 1 2 3 22 22 H 1.09003 * 109.47369 * 60.04864 * 1 2 3 23 23 H 1.09006 * 109.48738 * 301.59644 * 4 2 1 24 24 H 1.09003 * 109.50810 * 181.54120 * 4 2 1 25 25 H 1.00896 * 111.00120 * 183.18631 * 5 4 2 26 26 H 1.08994 * 109.48971 * 180.71565 * 6 5 4 27 27 H 1.08994 * 109.48573 * 60.64453 * 6 5 4 28 28 H 1.08999 * 109.47459 * 300.09509 * 9 7 6 29 29 H 1.09004 * 109.47455 * 60.09742 * 9 7 6 30 30 H 1.08997 * 109.47129 * 180.09855 * 9 7 6 31 31 H 1.09001 * 109.47226 * 56.05367 * 11 10 7 32 32 H 1.09004 * 109.46259 * 296.05534 * 11 10 7 33 33 H 0.97004 * 120.00335 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 1.2487 5 7 1.5809 -2.1183 1.2263 6 6 2.0711 -2.8121 0.0271 7 6 1.5604 -2.0893 -1.2216 8 1 0.4708 -2.1131 -1.2354 9 6 2.1021 -2.7852 -2.4719 10 7 2.0202 -0.6937 -1.1992 11 6 1.6133 0.0143 -2.4203 12 6 2.0166 1.4628 -2.3191 13 1 2.5986 1.8037 -1.4757 14 6 1.6378 2.3539 -3.3006 15 7 0.9292 1.9389 -4.3278 16 14 2.1311 4.1510 -3.1713 17 1 3.6121 4.2569 -3.1427 18 1 1.6038 4.8947 -4.3435 19 1 1.5694 4.7301 -1.9246 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5146 0.8895 22 1 -0.3634 0.5131 -0.8904 23 1 1.6544 -0.2267 2.1393 24 1 3.1303 -0.6989 1.2629 25 1 1.8604 -2.6045 2.0651 26 1 1.7072 -3.8394 0.0271 27 1 3.1611 -2.8120 0.0271 28 1 3.1918 -2.7620 -2.4575 29 1 1.7610 -3.8203 -2.4883 30 1 1.7395 -2.2691 -3.3608 31 1 0.5317 -0.0545 -2.5369 32 1 2.1013 -0.4394 -3.2830 33 1 0.6624 2.5660 -5.0182 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068914836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = -16.716386 kcal Electronic energy + Delta-G solvation = -13593.466718 eV Core-core repulsion = 11459.966535 eV Total energy + Delta-G solvation = -2133.500184 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53780 -35.93081 -34.39335 -33.92873 -30.21918 -28.11126 -27.58040 -25.74853 -23.15223 -22.66409 -19.44315 -18.31213 -17.54161 -16.54705 -16.48529 -15.58764 -15.46225 -15.05319 -14.74076 -14.00568 -13.88629 -13.28466 -13.23616 -12.93697 -12.83282 -12.54665 -12.46094 -12.40441 -12.06756 -11.86872 -11.59099 -11.15407 -10.95721 -10.58239 -9.36235 -8.85583 -8.19580 -6.28605 1.39496 1.42454 1.50082 2.39948 3.13750 3.31221 3.37339 4.01035 4.14595 4.25928 4.38819 4.46988 4.57218 4.72256 4.77782 4.79395 4.86189 4.95374 5.05666 5.16077 5.20958 5.31298 5.33878 5.44077 5.57358 5.66607 6.01752 6.10028 6.36811 6.63930 6.76479 6.89977 7.40802 8.91833 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045374 B = 0.011321 C = 0.009958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.946139 B = 2472.638815 C = 2811.001077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 H 0.070 0.930 4 C 0.073 3.927 5 N -0.690 5.690 6 C 0.076 3.924 7 C 0.070 3.930 8 H 0.025 0.975 9 C -0.137 4.137 10 N -0.536 5.536 11 C 0.211 3.789 12 C -0.524 4.524 13 H 0.063 0.937 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.267 1.267 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.020 0.980 23 H 0.093 0.907 24 H 0.032 0.968 25 H 0.355 0.645 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.033 0.967 31 H -0.036 1.036 32 H 0.005 0.995 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.800 -7.275 10.022 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.026 4.026 3 H 0.088 0.912 4 C -0.057 4.057 5 N -0.322 5.322 6 C -0.054 4.054 7 C -0.039 4.039 8 H 0.043 0.957 9 C -0.195 4.195 10 N -0.261 5.261 11 C 0.084 3.916 12 C -0.562 4.562 13 H 0.081 0.919 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.192 1.192 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.039 0.961 23 H 0.111 0.889 24 H 0.050 0.950 25 H 0.174 0.826 26 H 0.115 0.885 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.052 0.948 31 H -0.019 1.019 32 H 0.023 0.977 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.635 -7.079 9.610 12.048 hybrid contribution 0.021 0.991 -0.456 1.091 sum 1.656 -6.088 9.155 11.118 Atomic orbital electron populations 1.22065 0.97793 1.01204 1.00252 1.21676 0.93096 0.97904 0.89937 0.91174 1.21954 0.97247 0.89392 0.97068 1.60414 1.63775 1.02707 1.05321 1.21941 0.97367 0.97370 0.88713 1.21760 0.96644 0.89361 0.96090 0.95719 1.21769 1.01362 1.00182 0.96175 1.62447 1.59064 1.01592 1.02994 1.19318 0.91715 0.92822 0.87710 1.21476 1.33314 0.94042 1.07387 0.91926 1.25874 0.95070 1.03657 0.94879 1.70087 1.38925 1.36709 1.11683 0.85511 0.78838 0.79038 0.77709 1.19310 1.20950 1.19234 0.92281 0.91744 0.96070 0.88915 0.94980 0.82569 0.88548 0.94691 0.92334 0.89919 0.94796 1.01865 0.97747 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.16 8.37 71.98 0.60 -5.55 16 2 C 0.08 3.33 2.62 44.92 0.12 3.44 16 3 H 0.07 3.13 6.01 -2.39 -0.01 3.12 16 4 C 0.07 2.22 6.15 86.31 0.53 2.75 16 5 N -0.69 -18.51 6.22 -513.44 -3.19 -21.71 16 6 C 0.08 2.15 6.00 86.31 0.52 2.67 16 7 C 0.07 2.61 2.18 44.92 0.10 2.71 16 8 H 0.02 1.01 6.35 -2.39 -0.02 0.99 16 9 C -0.14 -4.73 8.86 71.98 0.64 -4.09 16 10 N -0.54 -23.82 4.58 -849.92 -3.89 -27.70 16 11 C 0.21 11.49 3.75 85.56 0.32 11.81 16 12 C -0.52 -30.07 8.31 25.60 0.21 -29.85 16 13 H 0.06 3.51 6.36 -2.91 -0.02 3.49 16 14 C 0.00 0.19 5.46 84.66 0.46 0.65 16 15 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 16 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H 0.06 2.28 5.94 -2.39 -0.01 2.27 16 21 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 22 H 0.02 0.98 6.65 -2.39 -0.02 0.96 16 23 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.35 7.15 8.90 -89.70 -0.80 6.35 16 26 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.36 6.45 -2.39 -0.02 1.34 16 31 H -0.04 -2.19 6.79 -2.39 -0.02 -2.21 16 32 H 0.00 0.27 6.48 -2.39 -0.02 0.25 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -64.83 251.87 -0.98 -65.82 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.29 Total: 9.09 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 3.50 Total: -15.47 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -6.80 Total: -106.30 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.83 -0.98 -65.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068914836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.099 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds