Wall clock time and date at job start Mon Mar 30 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49923 * 2 1 4 4 C 1.53043 * 109.49226 * 239.94304 * 2 1 3 5 5 N 1.46957 * 109.36517 * 181.62859 * 4 2 1 6 6 C 1.46952 * 110.87948 * 59.32408 * 5 4 2 7 7 C 1.53052 * 109.36256 * 300.67681 * 6 5 4 8 8 H 1.08998 * 109.49012 * 178.36740 * 7 6 5 9 9 C 1.53002 * 109.50828 * 298.42792 * 7 6 5 10 10 N 1.46957 * 109.48848 * 120.04977 * 2 1 3 11 11 C 1.46907 * 110.99775 * 303.15842 * 10 2 1 12 12 C 1.50706 * 109.46530 * 173.38308 * 11 10 2 13 13 H 1.07999 * 120.00314 * 355.05803 * 12 11 10 14 14 C 1.37878 * 119.99701 * 175.05283 * 12 11 10 15 15 N 1.31515 * 119.99731 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47552 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47088 * 300.00131 * 16 14 12 19 19 H 1.48502 * 109.47263 * 59.99846 * 16 14 12 20 20 H 1.08996 * 109.47905 * 306.47786 * 1 2 3 21 21 H 1.09004 * 109.47248 * 66.47694 * 1 2 3 22 22 H 1.09001 * 109.46836 * 186.47375 * 1 2 3 23 23 H 1.09007 * 109.49088 * 61.65905 * 4 2 1 24 24 H 1.08997 * 109.48994 * 301.60134 * 4 2 1 25 25 H 1.00904 * 110.99467 * 183.19220 * 5 4 2 26 26 H 1.09003 * 109.48715 * 180.71428 * 6 5 4 27 27 H 1.08998 * 109.49260 * 60.64266 * 6 5 4 28 28 H 1.08998 * 109.47342 * 179.90381 * 9 7 6 29 29 H 1.09004 * 109.46662 * 299.89804 * 9 7 6 30 30 H 1.08997 * 109.47155 * 59.89711 * 9 7 6 31 31 H 1.08999 * 109.47019 * 53.39141 * 11 10 2 32 32 H 1.08993 * 109.47304 * 293.38197 * 11 10 2 33 33 H 0.96999 * 120.00396 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7226 -1.2487 5 7 3.5097 -0.7552 -1.2263 6 6 4.0000 -1.4489 -0.0272 7 6 3.4893 -0.7263 1.2216 8 1 3.8277 -1.2559 2.1121 9 6 4.0313 0.7044 1.2415 10 7 2.0203 -0.6937 1.1992 11 6 1.4887 -0.0737 2.4203 12 6 1.8782 -0.9045 3.6158 13 1 2.3927 -1.8437 3.4763 14 6 1.5777 -0.4654 4.8878 15 7 0.9508 0.6782 5.0577 16 14 2.0610 -1.4947 6.3697 17 1 1.6283 -0.8069 7.6127 18 1 1.4044 -2.8239 6.2846 19 1 3.5354 -1.6714 6.3901 20 1 -0.3635 0.6109 0.8263 21 1 -0.3634 0.4102 -0.9423 22 1 -0.3633 -1.0211 0.1159 23 1 1.7022 -0.1930 -2.1394 24 1 1.6545 -1.7418 -1.2626 25 1 3.8747 -1.1810 -2.0651 26 1 5.0900 -1.4488 -0.0272 27 1 3.6361 -2.4764 -0.0272 28 1 3.6659 1.2190 2.1302 29 1 5.1209 0.6798 1.2582 30 1 3.6934 1.2334 0.3505 31 1 0.4021 -0.0171 2.3557 32 1 1.8993 0.9304 2.5263 33 1 0.7002 1.2129 4.2882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068914841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:47 Heat of formation + Delta-G solvation = 1.571205 kcal Electronic energy + Delta-G solvation = -13603.649265 eV Core-core repulsion = 11470.942091 eV Total energy + Delta-G solvation = -2132.707174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.09612 -34.45565 -32.77941 -32.31615 -28.34390 -26.32020 -25.93772 -23.94593 -21.59004 -21.21415 -18.03887 -16.59012 -16.19762 -15.05183 -14.31917 -14.25266 -13.90132 -13.64679 -13.06570 -12.63654 -12.05679 -11.80820 -11.68227 -11.22743 -11.09253 -11.02840 -10.89585 -10.65964 -10.37981 -10.07722 -9.94374 -9.65096 -8.60242 -8.33173 -8.18160 -7.19079 -6.33022 -4.01077 3.45679 3.47823 3.66318 4.50137 4.54142 4.82202 5.30844 5.41327 5.50855 5.56853 5.71910 5.79223 5.90329 6.00048 6.05766 6.14127 6.23550 6.29038 6.50795 6.56332 6.67378 6.73037 6.93792 7.12320 7.22563 7.32879 7.57849 7.89148 8.08892 8.40740 8.63178 8.91823 9.69188 11.05971 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044987 B = 0.011151 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.250205 B = 2510.363107 C = 2803.153804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.041 0.959 4 C 0.068 3.932 5 N -0.690 5.690 6 C 0.063 3.937 7 C 0.091 3.909 8 H 0.093 0.907 9 C -0.170 4.170 10 N -0.522 5.522 11 C 0.177 3.823 12 C -0.586 4.586 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 1.070 2.930 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.333 0.667 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.023 0.977 32 H -0.013 1.013 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -2.435 -10.449 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 H 0.058 0.942 4 C -0.062 4.062 5 N -0.320 5.320 6 C -0.066 4.066 7 C -0.018 4.018 8 H 0.111 0.889 9 C -0.229 4.229 10 N -0.247 5.247 11 C 0.052 3.948 12 C -0.625 4.625 13 H 0.073 0.927 14 C -0.190 4.190 15 N -0.552 5.552 16 Si 0.899 3.101 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.215 1.215 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.052 0.948 25 H 0.150 0.850 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.005 0.995 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.370 -2.352 -8.519 9.459 hybrid contribution 0.142 -0.030 -1.899 1.905 sum 3.512 -2.382 -10.419 11.250 Atomic orbital electron populations 1.21820 0.94931 1.02443 1.00783 1.21600 0.94655 0.96107 0.91062 0.94153 1.22002 0.87472 0.99069 0.97647 1.60497 1.08741 1.58051 1.04698 1.22082 0.98660 0.95445 0.90434 1.21581 0.88517 0.95129 0.96599 0.88929 1.22238 0.99930 0.98976 1.01732 1.62432 1.06711 1.53259 1.02288 1.19913 0.94916 0.93218 0.86782 1.21963 1.41290 1.07630 0.91596 0.92738 1.25804 0.94785 0.97649 1.00720 1.70792 1.37591 1.12461 1.34342 0.83521 0.76050 0.75018 0.75545 1.20885 1.21457 1.21529 0.92139 0.93259 0.92120 0.91427 0.94802 0.85042 0.91232 0.94887 0.92399 0.93675 0.92440 0.95870 0.99491 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.65 37.16 0.32 -2.14 16 2 C 0.08 1.41 2.18 -67.66 -0.15 1.26 16 3 H 0.04 0.81 6.35 -51.93 -0.33 0.48 16 4 C 0.07 1.06 6.00 -3.77 -0.02 1.04 16 5 N -0.69 -10.36 6.22 -113.64 -0.71 -11.07 16 6 C 0.06 1.04 6.15 -3.77 -0.02 1.02 16 7 C 0.09 1.84 2.76 -67.65 -0.19 1.66 16 8 H 0.09 2.08 6.66 -51.93 -0.35 1.73 16 9 C -0.17 -3.34 8.37 37.16 0.31 -3.03 16 10 N -0.52 -11.52 4.49 -219.99 -0.99 -12.51 16 11 C 0.18 4.61 3.54 -4.97 -0.02 4.59 16 12 C -0.59 -16.69 8.34 -34.44 -0.29 -16.97 16 13 H 0.05 1.56 7.09 -52.49 -0.37 1.19 16 14 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 15 N -0.92 -28.05 13.65 55.43 0.76 -27.29 16 16 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H 0.06 1.14 6.60 -51.93 -0.34 0.80 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.33 4.05 8.90 -39.29 -0.35 3.70 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.29 6.42 -51.93 -0.33 0.96 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.11 5.94 -51.93 -0.31 0.80 16 31 H 0.02 0.64 6.03 -51.93 -0.31 0.32 16 32 H -0.01 -0.35 5.92 -51.93 -0.31 -0.65 16 33 H 0.27 8.16 7.19 -40.82 -0.29 7.86 16 LS Contribution 251.13 15.07 3.78 3.78 Total: -1.00 -30.39 251.13 -7.44 -37.83 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.05 Total: 1.06 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.15 Total: -12.28 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.94 Total: -50.86 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.39 -7.44 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068914841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.401 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds