Wall clock time and date at job start Mon Mar 30 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49923 * 2 1 4 4 C 1.53043 * 109.49226 * 239.94304 * 2 1 3 5 5 N 1.46957 * 109.36517 * 181.62859 * 4 2 1 6 6 C 1.46952 * 110.87948 * 59.32408 * 5 4 2 7 7 C 1.53052 * 109.36256 * 300.67681 * 6 5 4 8 8 H 1.08998 * 109.49012 * 178.36740 * 7 6 5 9 9 C 1.53002 * 109.50828 * 298.42792 * 7 6 5 10 10 N 1.46957 * 109.48848 * 120.04977 * 2 1 3 11 11 C 1.46907 * 110.99775 * 303.15842 * 10 2 1 12 12 C 1.50706 * 109.46530 * 173.38308 * 11 10 2 13 13 H 1.07999 * 120.00314 * 355.05803 * 12 11 10 14 14 C 1.37878 * 119.99701 * 175.05283 * 12 11 10 15 15 N 1.31515 * 119.99731 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47552 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47088 * 300.00131 * 16 14 12 19 19 H 1.48502 * 109.47263 * 59.99846 * 16 14 12 20 20 H 1.08996 * 109.47905 * 306.47786 * 1 2 3 21 21 H 1.09004 * 109.47248 * 66.47694 * 1 2 3 22 22 H 1.09001 * 109.46836 * 186.47375 * 1 2 3 23 23 H 1.09007 * 109.49088 * 61.65905 * 4 2 1 24 24 H 1.08997 * 109.48994 * 301.60134 * 4 2 1 25 25 H 1.00904 * 110.99467 * 183.19220 * 5 4 2 26 26 H 1.09003 * 109.48715 * 180.71428 * 6 5 4 27 27 H 1.08998 * 109.49260 * 60.64266 * 6 5 4 28 28 H 1.08998 * 109.47342 * 179.90381 * 9 7 6 29 29 H 1.09004 * 109.46662 * 299.89804 * 9 7 6 30 30 H 1.08997 * 109.47155 * 59.89711 * 9 7 6 31 31 H 1.08999 * 109.47019 * 53.39141 * 11 10 2 32 32 H 1.08993 * 109.47304 * 293.38197 * 11 10 2 33 33 H 0.96999 * 120.00396 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7226 -1.2487 5 7 3.5097 -0.7552 -1.2263 6 6 4.0000 -1.4489 -0.0272 7 6 3.4893 -0.7263 1.2216 8 1 3.8277 -1.2559 2.1121 9 6 4.0313 0.7044 1.2415 10 7 2.0203 -0.6937 1.1992 11 6 1.4887 -0.0737 2.4203 12 6 1.8782 -0.9045 3.6158 13 1 2.3927 -1.8437 3.4763 14 6 1.5777 -0.4654 4.8878 15 7 0.9508 0.6782 5.0577 16 14 2.0610 -1.4947 6.3697 17 1 1.6283 -0.8069 7.6127 18 1 1.4044 -2.8239 6.2846 19 1 3.5354 -1.6714 6.3901 20 1 -0.3635 0.6109 0.8263 21 1 -0.3634 0.4102 -0.9423 22 1 -0.3633 -1.0211 0.1159 23 1 1.7022 -0.1930 -2.1394 24 1 1.6545 -1.7418 -1.2626 25 1 3.8747 -1.1810 -2.0651 26 1 5.0900 -1.4488 -0.0272 27 1 3.6361 -2.4764 -0.0272 28 1 3.6659 1.2190 2.1302 29 1 5.1209 0.6798 1.2582 30 1 3.6934 1.2334 0.3505 31 1 0.4021 -0.0171 2.3557 32 1 1.8993 0.9304 2.5263 33 1 0.7002 1.2129 4.2882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068914841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:46 Heat of formation + Delta-G solvation = -21.532002 kcal Electronic energy + Delta-G solvation = -13604.651095 eV Core-core repulsion = 11470.942091 eV Total energy + Delta-G solvation = -2133.709004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65130 -36.17463 -34.49525 -34.05131 -30.11415 -27.86711 -27.67038 -25.74920 -23.40830 -22.74194 -19.64352 -18.66854 -17.62360 -16.69258 -15.95215 -15.78214 -15.60817 -15.35345 -14.71592 -14.23385 -13.81626 -13.35653 -13.33593 -12.97451 -12.92355 -12.60848 -12.45936 -12.41941 -11.95092 -11.93808 -11.58044 -11.24599 -10.71527 -10.53479 -9.44383 -8.98843 -8.66122 -6.35887 1.51512 1.60148 1.79436 2.55520 3.15421 3.18151 3.29624 3.90673 4.03305 4.14335 4.28691 4.36648 4.46753 4.60824 4.64309 4.68499 4.78470 4.82670 4.87885 5.04095 5.06737 5.11998 5.21124 5.24087 5.43768 5.81622 5.96390 6.02889 6.42261 6.46175 6.58349 6.71877 7.44098 8.72058 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044987 B = 0.011151 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.250205 B = 2510.363107 C = 2803.153804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 H 0.027 0.973 4 C 0.075 3.925 5 N -0.688 5.688 6 C 0.075 3.925 7 C 0.083 3.917 8 H 0.064 0.936 9 C -0.157 4.157 10 N -0.530 5.530 11 C 0.192 3.808 12 C -0.595 4.595 13 H 0.050 0.950 14 C -0.038 4.038 15 N -0.939 5.939 16 Si 1.118 2.882 17 H -0.284 1.284 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.032 0.968 21 H 0.087 0.913 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.034 0.966 25 H 0.356 0.644 26 H 0.095 0.905 27 H 0.031 0.969 28 H 0.017 0.983 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.004 0.996 32 H -0.039 1.039 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -3.599 -11.999 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.040 4.040 3 H 0.045 0.955 4 C -0.054 4.054 5 N -0.321 5.321 6 C -0.055 4.055 7 C -0.026 4.026 8 H 0.082 0.918 9 C -0.215 4.215 10 N -0.255 5.255 11 C 0.065 3.935 12 C -0.633 4.633 13 H 0.069 0.931 14 C -0.235 4.235 15 N -0.577 5.577 16 Si 0.940 3.060 17 H -0.209 1.209 18 H -0.196 1.196 19 H -0.195 1.195 20 H 0.051 0.949 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.052 0.948 25 H 0.176 0.824 26 H 0.113 0.887 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.022 0.978 32 H -0.022 1.022 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.395 -3.526 -10.124 11.586 hybrid contribution -0.174 0.362 -1.489 1.542 sum 4.220 -3.163 -11.613 12.755 Atomic orbital electron populations 1.21775 0.94148 1.01769 1.01736 1.21789 0.95496 0.95611 0.91122 0.95529 1.21945 0.87854 0.98948 0.96668 1.60419 1.08377 1.58155 1.05155 1.21928 0.99999 0.94571 0.89022 1.21651 0.87468 0.95549 0.97908 0.91769 1.22096 1.01239 0.98240 0.99955 1.62388 1.08048 1.53191 1.01874 1.19565 0.93654 0.91793 0.88473 1.22267 1.40731 1.07565 0.92762 0.93148 1.27355 0.94020 0.97892 1.04206 1.70924 1.39471 1.13602 1.33653 0.82917 0.76997 0.74130 0.71997 1.20936 1.19557 1.19479 0.94858 0.89445 0.92703 0.88282 0.94752 0.82391 0.88664 0.95030 0.96345 0.91317 0.91908 0.97767 1.02162 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.65 71.98 0.62 -4.03 16 2 C 0.07 2.52 2.18 44.92 0.10 2.62 16 3 H 0.03 1.06 6.35 -2.39 -0.02 1.04 16 4 C 0.08 2.12 6.00 86.31 0.52 2.63 16 5 N -0.69 -18.19 6.22 -513.45 -3.19 -21.39 16 6 C 0.07 2.25 6.15 86.31 0.53 2.78 16 7 C 0.08 3.35 2.76 44.92 0.12 3.47 16 8 H 0.06 2.91 6.66 -2.39 -0.02 2.90 16 9 C -0.16 -6.13 8.37 71.98 0.60 -5.53 16 10 N -0.53 -23.60 4.49 -849.92 -3.82 -27.42 16 11 C 0.19 10.39 3.54 85.56 0.30 10.70 16 12 C -0.60 -34.77 8.34 25.60 0.21 -34.55 16 13 H 0.05 2.93 7.09 -2.91 -0.02 2.91 16 14 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 15 N -0.94 -59.28 13.65 21.45 0.29 -58.99 16 16 Si 1.12 51.44 29.90 68.60 2.05 53.49 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H 0.03 1.29 6.60 -2.39 -0.02 1.27 16 21 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 22 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.36 7.03 8.90 -89.69 -0.80 6.23 16 26 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.02 0.83 6.42 -2.39 -0.02 0.81 16 29 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.06 2.37 5.94 -2.39 -0.01 2.35 16 31 H 0.00 0.25 6.03 -2.39 -0.01 0.24 16 32 H -0.04 -2.30 5.92 -2.39 -0.01 -2.31 16 33 H 0.25 16.21 7.19 -92.71 -0.67 15.54 16 Total: -1.00 -67.22 251.13 -0.80 -68.02 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.39 Total: 9.96 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.47 Total: -23.67 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -6.72 Total: -107.80 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -67.22 -0.80 -68.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068914841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.487 kcal (2) G-P(sol) polarization free energy of solvation -67.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds