Wall clock time and date at job start Mon Mar 30 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.48944 * 2 1 4 4 C 1.53055 * 109.48648 * 239.95834 * 2 1 3 5 5 N 1.46956 * 109.36478 * 181.63153 * 4 2 1 6 6 C 1.46898 * 111.00045 * 183.18608 * 5 4 2 7 7 C 1.50705 * 109.47274 * 300.69485 * 6 5 4 8 8 H 1.08003 * 119.99944 * 4.81348 * 7 6 5 9 9 C 1.37872 * 119.99811 * 184.82008 * 7 6 5 10 10 N 1.31511 * 120.00239 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99710 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47295 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47396 * 120.00010 * 11 9 7 14 14 H 1.48506 * 109.46902 * 239.99551 * 11 9 7 15 15 C 1.46961 * 110.87948 * 59.32166 * 5 4 2 16 16 C 1.53055 * 109.36391 * 300.67885 * 15 5 4 17 17 H 1.09006 * 109.48884 * 298.43792 * 16 15 5 18 18 C 1.53001 * 109.49065 * 178.37064 * 16 15 5 19 19 N 1.46956 * 109.36478 * 58.40252 * 16 15 5 20 20 H 1.08996 * 109.47422 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46719 * 300.04000 * 1 2 3 22 22 H 1.08996 * 109.47020 * 60.03675 * 1 2 3 23 23 H 1.08998 * 109.48999 * 61.66048 * 4 2 1 24 24 H 1.09002 * 109.48448 * 301.59779 * 4 2 1 25 25 H 1.09004 * 109.47034 * 60.69020 * 6 5 4 26 26 H 1.08992 * 109.47333 * 180.69142 * 6 5 4 27 27 H 0.97000 * 119.99906 * 180.02562 * 10 9 7 28 28 H 1.08995 * 109.48834 * 60.64263 * 15 5 4 29 29 H 1.08999 * 109.48655 * 180.71322 * 15 5 4 30 30 H 1.08992 * 109.46829 * 59.99784 * 18 16 15 31 31 H 1.08997 * 109.47024 * 180.02562 * 18 16 15 32 32 H 1.09002 * 109.46460 * 299.99736 * 18 16 15 33 33 H 1.00903 * 111.00427 * 64.54843 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5096 -0.7550 -1.2267 6 6 4.0410 -1.3747 -2.4480 7 6 3.5143 -2.7817 -2.5676 8 1 2.7909 -3.1498 -1.8551 9 6 3.9559 -3.5988 -3.5865 10 7 4.8364 -3.1503 -4.4543 11 14 3.3035 -5.3429 -3.7343 12 1 2.3310 -5.6018 -2.6424 13 1 2.6303 -5.5100 -5.0474 14 1 4.4312 -6.3036 -3.6304 15 6 3.9999 -1.4492 -0.0278 16 6 3.4894 -0.7269 1.2213 17 1 3.8756 0.2924 1.2353 18 6 3.9645 -1.4706 2.4711 19 7 2.0204 -0.6942 1.1990 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5145 0.8897 22 1 -0.3633 0.5132 -0.8903 23 1 1.7021 -0.1926 -2.1394 24 1 1.6543 -1.7415 -1.2631 25 1 3.7275 -0.7945 -3.3159 26 1 5.1296 -1.3972 -2.4000 27 1 5.1469 -3.7251 -5.1714 28 1 3.6359 -2.4766 -0.0280 29 1 5.0899 -1.4492 -0.0278 30 1 5.0540 -1.4963 2.4863 31 1 3.6003 -0.9561 3.3604 32 1 3.5770 -2.4893 2.4568 33 1 1.6369 -1.6255 1.2598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:30 Heat of formation + Delta-G solvation = -29.070844 kcal Electronic energy + Delta-G solvation = -13336.061179 eV Core-core repulsion = 11202.025266 eV Total energy + Delta-G solvation = -2134.035913 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40728 -36.28882 -34.36475 -34.21388 -29.17291 -28.94996 -27.40489 -25.91512 -22.70024 -22.00068 -21.36026 -18.67282 -16.89715 -16.37134 -16.16966 -15.90584 -15.70828 -15.08761 -14.59092 -13.73857 -13.59821 -13.46812 -13.43769 -12.89599 -12.81620 -12.64666 -12.49994 -12.23925 -12.17469 -11.81385 -11.72665 -11.68962 -11.63652 -10.68066 -9.41468 -9.03647 -8.22016 -6.42955 1.31294 1.32162 1.43985 2.31251 3.02139 3.16762 3.33462 4.02186 4.22393 4.23507 4.30891 4.39833 4.50528 4.69509 4.79402 4.84710 4.89925 4.95750 5.04523 5.17469 5.20333 5.23098 5.32699 5.33951 5.34552 5.66124 5.95998 6.08791 6.15512 6.46215 6.48327 6.77124 7.28821 8.80641 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036768 B = 0.010489 C = 0.009853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.359172 B = 2668.696714 C = 2841.206527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.090 3.910 3 H 0.081 0.919 4 C 0.035 3.965 5 N -0.544 5.544 6 C 0.199 3.801 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.010 3.990 10 N -0.925 5.925 11 Si 0.961 3.039 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.036 3.964 16 C 0.090 3.910 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.669 5.669 20 H 0.051 0.949 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.018 0.982 25 H 0.001 0.999 26 H 0.005 0.995 27 H 0.266 0.734 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 3.132 10.964 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.020 4.020 3 H 0.099 0.901 4 C -0.095 4.095 5 N -0.267 5.267 6 C 0.072 3.928 7 C -0.596 4.596 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.201 1.201 14 H -0.202 1.202 15 C -0.094 4.094 16 C -0.020 4.020 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.298 5.298 20 H 0.070 0.930 21 H 0.096 0.904 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.036 0.964 25 H 0.019 0.981 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.773 4.154 11.242 13.303 hybrid contribution 0.074 -2.480 -1.618 2.962 sum -5.699 1.674 9.624 11.310 Atomic orbital electron populations 1.21702 0.92324 1.02167 1.02918 1.21641 0.96133 0.97958 0.86316 0.90120 1.22712 0.88436 0.98542 0.99825 1.62561 1.08360 1.52735 1.03045 1.19416 0.94105 0.91799 0.87463 1.21933 1.25349 0.99692 1.12616 0.92819 1.25860 0.94989 1.02879 0.95182 1.70072 1.31825 1.38254 1.16331 0.85468 0.78384 0.79376 0.78222 1.19202 1.20129 1.20163 1.22695 0.99676 0.95471 0.91578 1.21636 0.87760 0.99714 0.92896 0.90106 1.21701 1.01353 0.99760 0.96306 1.61072 1.06980 1.23100 1.38642 0.93003 0.90425 0.91433 0.92427 0.96380 0.98096 0.97717 0.92475 0.96537 0.92503 0.91451 0.90407 0.92992 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.45 71.98 0.68 -2.53 16 2 C 0.09 2.75 3.20 44.92 0.14 2.89 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.03 1.39 4.52 86.31 0.39 1.78 16 5 N -0.54 -24.44 4.92 -900.27 -4.43 -28.87 16 6 C 0.20 10.90 5.14 85.56 0.44 11.34 16 7 C -0.56 -31.61 7.67 25.60 0.20 -31.41 16 8 H 0.05 3.02 5.81 -2.91 -0.02 3.00 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 11 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.04 1.43 4.60 86.31 0.40 1.83 16 16 C 0.09 2.77 3.20 44.92 0.14 2.91 16 17 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 18 C -0.13 -3.22 9.45 71.98 0.68 -2.54 16 19 N -0.67 -19.43 6.21 -469.00 -2.91 -22.35 16 20 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 22 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.02 0.79 6.46 -2.39 -0.02 0.77 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 26 H 0.00 0.28 8.12 -2.39 -0.02 0.26 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.02 0.72 6.95 -2.39 -0.02 0.70 16 29 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.34 9.64 8.70 -89.69 -0.78 8.86 16 Total: -1.00 -62.25 261.86 -1.21 -63.46 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.29 Total: 11.64 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 3.53 Total: -14.67 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -7.06 Total: -106.78 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.25 -1.21 -63.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.391 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds