Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48874 * 2 1 4 4 C 1.53052 * 109.49305 * 120.04167 * 2 1 3 5 5 N 1.46955 * 109.36002 * 61.56291 * 4 2 1 6 6 C 1.46903 * 110.99883 * 183.19032 * 5 4 2 7 7 C 1.50708 * 109.46990 * 295.18154 * 6 5 4 8 8 H 1.07996 * 119.99870 * 5.00749 * 7 6 5 9 9 C 1.37877 * 120.00075 * 185.00842 * 7 6 5 10 10 N 1.31521 * 119.99762 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00126 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47285 * 60.00197 * 11 9 7 13 13 H 1.48500 * 109.47326 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47402 * 299.99969 * 11 9 7 15 15 C 1.46958 * 110.87859 * 59.32523 * 5 4 2 16 16 C 1.53044 * 109.36470 * 300.67462 * 15 5 4 17 17 H 1.09007 * 109.49157 * 298.40980 * 16 15 5 18 18 C 1.53003 * 109.48954 * 178.37035 * 16 15 5 19 19 N 1.46954 * 109.36488 * 58.40336 * 16 15 5 20 20 H 1.09001 * 109.46705 * 299.95877 * 1 2 3 21 21 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47382 * 59.95319 * 1 2 3 23 23 H 1.08992 * 109.49021 * 181.53424 * 4 2 1 24 24 H 1.08997 * 109.48757 * 301.59788 * 4 2 1 25 25 H 1.09000 * 109.47105 * 55.17993 * 6 5 4 26 26 H 1.08999 * 109.47545 * 175.18372 * 6 5 4 27 27 H 0.96996 * 120.00086 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.48943 * 60.64752 * 15 5 4 29 29 H 1.09003 * 109.48981 * 180.68848 * 15 5 4 30 30 H 1.09003 * 109.47181 * 60.00526 * 18 16 15 31 31 H 1.09001 * 109.46828 * 180.02562 * 18 16 15 32 32 H 1.08992 * 109.47360 * 299.99984 * 18 16 15 33 33 H 1.00907 * 111.00271 * 176.81494 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7223 1.2490 5 7 1.5809 -2.1179 1.2269 6 6 1.9878 -2.8256 2.4482 7 6 3.4913 -2.9170 2.4986 8 1 4.0878 -2.4226 1.7462 9 6 4.1052 -3.6318 3.5052 10 7 3.3787 -4.2334 4.4217 11 14 5.9686 -3.7456 3.5672 12 1 6.5439 -2.3824 3.6931 13 1 6.3758 -4.5641 4.7374 14 1 6.4675 -4.3803 2.3209 15 6 2.0712 -2.8119 0.0279 16 6 1.5606 -2.0897 -1.2210 17 1 0.4708 -2.1138 -1.2351 18 6 2.1027 -2.7860 -2.4709 19 7 2.0203 -0.6941 -1.1990 20 1 -0.3633 0.5132 0.8904 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5145 -0.8895 23 1 3.1303 -0.6985 1.2628 24 1 1.6545 -0.2262 2.1394 25 1 1.6275 -2.2809 3.3209 26 1 1.5628 -3.8293 2.4453 27 1 3.8105 -4.7366 5.1296 28 1 3.1612 -2.8120 0.0279 29 1 1.7075 -3.8395 0.0283 30 1 1.7630 -3.8216 -2.4860 31 1 1.7391 -2.2710 -3.3602 32 1 3.1922 -2.7611 -2.4570 33 1 1.7408 -0.2079 -2.0379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -1.704124 kcal Electronic energy + Delta-G solvation = -13422.858708 eV Core-core repulsion = 11290.009505 eV Total energy + Delta-G solvation = -2132.849203 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.88323 -34.58913 -32.66923 -32.11615 -27.85661 -26.89303 -26.12670 -24.11119 -21.50462 -20.78178 -18.32104 -16.41747 -15.83246 -14.90419 -14.62926 -14.30783 -13.87727 -13.12307 -13.02096 -12.34987 -12.08957 -12.00712 -11.74106 -11.53980 -11.04685 -10.95816 -10.79389 -10.52611 -10.42833 -10.15199 -9.94024 -9.75694 -9.44557 -8.39730 -8.04736 -7.09835 -5.99054 -4.07983 3.31556 3.35918 3.39228 4.43899 4.53604 5.07668 5.30274 5.34820 5.46321 5.51316 5.67319 5.79410 5.87854 6.04993 6.11961 6.17071 6.21246 6.33900 6.46573 6.64650 6.77176 6.82767 6.96583 7.27228 7.49322 7.55732 7.73479 7.94081 8.11855 8.33970 8.34566 9.02793 9.58631 11.05774 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.010448 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.527549 B = 2679.319556 C = 2896.021616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 H 0.074 0.926 4 C 0.069 3.931 5 N -0.541 5.541 6 C 0.187 3.813 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.072 3.928 16 C 0.080 3.920 17 H 0.042 0.958 18 C -0.142 4.142 19 N -0.679 5.679 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 5.505 -9.983 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 H 0.092 0.908 4 C -0.060 4.060 5 N -0.265 5.265 6 C 0.061 3.939 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.717 3.283 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.057 4.057 16 C -0.030 4.030 17 H 0.060 0.940 18 C -0.200 4.200 19 N -0.310 5.310 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.650 5.224 -9.533 11.467 hybrid contribution 1.032 -0.005 0.005 1.032 sum -2.618 5.219 -9.529 11.175 Atomic orbital electron populations 1.22373 0.97651 1.02877 1.00391 1.21687 0.92779 0.96972 0.91249 0.90814 1.21921 0.98758 0.90386 0.94958 1.62650 1.58277 1.01625 1.03963 1.19727 0.93869 0.94058 0.86211 1.21744 0.93183 1.32420 1.11313 0.92395 1.24965 0.98076 0.95273 0.95514 1.69939 1.35312 1.33507 1.14377 0.86699 0.86029 0.78095 0.77455 1.20278 1.21263 1.20263 1.21931 0.99018 0.96352 0.88443 1.21639 0.97131 0.88475 0.95765 0.94047 1.21770 1.02024 0.99886 0.96368 1.60730 1.63395 1.02638 1.04242 0.92635 0.91034 0.94378 0.93696 0.91668 0.95567 0.94858 0.92823 0.93396 0.91743 0.92290 0.93398 0.91998 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 8.83 37.16 0.33 -2.21 16 2 C 0.08 1.34 3.70 -67.65 -0.25 1.09 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.07 1.38 4.75 -3.77 -0.02 1.37 16 5 N -0.54 -11.87 4.23 -235.91 -1.00 -12.87 16 6 C 0.19 4.91 5.14 -4.97 -0.03 4.88 16 7 C -0.55 -15.33 7.66 -34.44 -0.26 -15.60 16 8 H 0.06 1.63 5.82 -52.49 -0.31 1.33 16 9 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 11 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.07 1.46 4.52 -3.77 -0.02 1.44 16 16 C 0.08 1.29 2.81 -67.66 -0.19 1.10 16 17 H 0.04 0.67 6.35 -51.93 -0.33 0.34 16 18 C -0.14 -1.94 9.46 37.16 0.35 -1.59 16 19 N -0.68 -10.61 6.34 -99.61 -0.63 -11.24 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.07 1.17 5.94 -51.93 -0.31 0.86 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.04 1.01 6.78 -51.93 -0.35 0.66 16 24 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 25 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.05 1.10 6.61 -51.93 -0.34 0.75 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.33 4.31 8.81 -39.29 -0.35 3.97 16 LS Contribution 257.04 15.07 3.87 3.87 Total: -1.00 -29.11 257.04 -7.57 -36.68 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.35 Total: 0.37 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.18 Total: -7.78 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.89 Total: -49.95 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.11 -7.57 -36.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.975 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds