Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48874 * 2 1 4 4 C 1.53052 * 109.49305 * 120.04167 * 2 1 3 5 5 N 1.46955 * 109.36002 * 61.56291 * 4 2 1 6 6 C 1.46903 * 110.99883 * 183.19032 * 5 4 2 7 7 C 1.50708 * 109.46990 * 295.18154 * 6 5 4 8 8 H 1.07996 * 119.99870 * 5.00749 * 7 6 5 9 9 C 1.37877 * 120.00075 * 185.00842 * 7 6 5 10 10 N 1.31521 * 119.99762 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00126 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47285 * 60.00197 * 11 9 7 13 13 H 1.48500 * 109.47326 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47402 * 299.99969 * 11 9 7 15 15 C 1.46958 * 110.87859 * 59.32523 * 5 4 2 16 16 C 1.53044 * 109.36470 * 300.67462 * 15 5 4 17 17 H 1.09007 * 109.49157 * 298.40980 * 16 15 5 18 18 C 1.53003 * 109.48954 * 178.37035 * 16 15 5 19 19 N 1.46954 * 109.36488 * 58.40336 * 16 15 5 20 20 H 1.09001 * 109.46705 * 299.95877 * 1 2 3 21 21 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47382 * 59.95319 * 1 2 3 23 23 H 1.08992 * 109.49021 * 181.53424 * 4 2 1 24 24 H 1.08997 * 109.48757 * 301.59788 * 4 2 1 25 25 H 1.09000 * 109.47105 * 55.17993 * 6 5 4 26 26 H 1.08999 * 109.47545 * 175.18372 * 6 5 4 27 27 H 0.96996 * 120.00086 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.48943 * 60.64752 * 15 5 4 29 29 H 1.09003 * 109.48981 * 180.68848 * 15 5 4 30 30 H 1.09003 * 109.47181 * 60.00526 * 18 16 15 31 31 H 1.09001 * 109.46828 * 180.02562 * 18 16 15 32 32 H 1.08992 * 109.47360 * 299.99984 * 18 16 15 33 33 H 1.00907 * 111.00271 * 176.81494 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7223 1.2490 5 7 1.5809 -2.1179 1.2269 6 6 1.9878 -2.8256 2.4482 7 6 3.4913 -2.9170 2.4986 8 1 4.0878 -2.4226 1.7462 9 6 4.1052 -3.6318 3.5052 10 7 3.3787 -4.2334 4.4217 11 14 5.9686 -3.7456 3.5672 12 1 6.5439 -2.3824 3.6931 13 1 6.3758 -4.5641 4.7374 14 1 6.4675 -4.3803 2.3209 15 6 2.0712 -2.8119 0.0279 16 6 1.5606 -2.0897 -1.2210 17 1 0.4708 -2.1138 -1.2351 18 6 2.1027 -2.7860 -2.4709 19 7 2.0203 -0.6941 -1.1990 20 1 -0.3633 0.5132 0.8904 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5145 -0.8895 23 1 3.1303 -0.6985 1.2628 24 1 1.6545 -0.2262 2.1394 25 1 1.6275 -2.2809 3.3209 26 1 1.5628 -3.8293 2.4453 27 1 3.8105 -4.7366 5.1296 28 1 3.1612 -2.8120 0.0279 29 1 1.7075 -3.8395 0.0283 30 1 1.7630 -3.8216 -2.4860 31 1 1.7391 -2.2710 -3.3602 32 1 3.1922 -2.7611 -2.4570 33 1 1.7408 -0.2079 -2.0379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -23.193384 kcal Electronic energy + Delta-G solvation = -13423.790552 eV Core-core repulsion = 11290.009505 eV Total energy + Delta-G solvation = -2133.781047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39454 -36.36767 -34.23603 -33.95507 -29.38992 -28.60623 -27.56558 -26.03449 -23.04627 -22.46468 -19.90516 -18.44879 -17.33733 -16.64789 -16.13640 -15.95639 -15.51808 -14.86483 -14.59778 -13.89688 -13.63114 -13.44404 -13.16099 -13.12538 -12.79941 -12.65280 -12.37199 -12.26038 -12.08513 -11.84545 -11.81723 -11.47852 -11.14907 -10.62457 -9.33418 -8.98313 -8.16841 -6.36994 1.34844 1.36513 1.44988 2.35759 3.06886 3.29517 3.37978 4.01380 4.13363 4.24113 4.35426 4.48546 4.58569 4.71829 4.77858 4.87012 4.96672 5.03194 5.13312 5.16094 5.23865 5.25946 5.30607 5.37203 5.54500 5.71814 6.02870 6.14412 6.22377 6.52786 6.67431 6.84346 7.34235 8.84978 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.010448 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.527549 B = 2679.319556 C = 2896.021616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.090 3.910 3 H 0.097 0.903 4 C 0.068 3.932 5 N -0.537 5.537 6 C 0.200 3.800 7 C -0.556 4.556 8 H 0.052 0.948 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.271 1.271 15 C 0.072 3.928 16 C 0.089 3.911 17 H 0.049 0.951 18 C -0.136 4.136 19 N -0.685 5.685 20 H 0.057 0.943 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.015 0.985 24 H 0.060 0.940 25 H 0.002 0.998 26 H 0.006 0.994 27 H 0.266 0.734 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 6.556 -11.779 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 H 0.115 0.885 4 C -0.061 4.061 5 N -0.260 5.260 6 C 0.073 3.927 7 C -0.595 4.595 8 H 0.071 0.929 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.782 3.218 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.196 1.196 15 C -0.057 4.057 16 C -0.021 4.021 17 H 0.067 0.933 18 C -0.194 4.194 19 N -0.318 5.318 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.416 6.293 -11.360 13.428 hybrid contribution 0.919 -0.319 0.571 1.128 sum -2.497 5.974 -10.789 12.583 Atomic orbital electron populations 1.22271 0.96088 1.02067 1.02002 1.21615 0.93881 0.97231 0.89292 0.88532 1.21980 0.97008 0.89534 0.97555 1.62596 1.58053 1.02450 1.02924 1.19392 0.93044 0.92712 0.87578 1.21919 0.93974 1.32387 1.11241 0.92949 1.25822 1.03090 0.94819 0.95051 1.70057 1.37361 1.34132 1.14989 0.85616 0.79970 0.78373 0.77794 1.19592 1.20390 1.19579 1.21971 0.97168 0.96707 0.89806 1.21517 0.97390 0.88748 0.94448 0.93317 1.21725 1.01274 1.00391 0.95997 1.60635 1.63737 1.02403 1.05027 0.92439 0.92992 0.91383 0.96654 0.92132 0.97959 0.97633 0.92544 0.96373 0.92709 0.91666 0.90433 0.93047 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 8.83 71.98 0.64 -3.74 16 2 C 0.09 2.70 3.70 44.92 0.17 2.86 16 3 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.07 2.76 4.75 86.31 0.41 3.17 16 5 N -0.54 -24.11 4.23 -900.29 -3.81 -27.93 16 6 C 0.20 10.96 5.14 85.56 0.44 11.40 16 7 C -0.56 -32.09 7.66 25.60 0.20 -31.90 16 8 H 0.05 3.04 5.82 -2.91 -0.02 3.02 16 9 C 0.01 0.67 5.46 84.65 0.46 1.13 16 10 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 11 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 C 0.07 2.98 4.52 86.31 0.39 3.37 16 16 C 0.09 2.72 2.81 44.92 0.13 2.85 16 17 H 0.05 1.46 6.35 -2.38 -0.02 1.45 16 18 C -0.14 -3.35 9.46 71.98 0.68 -2.67 16 19 N -0.68 -19.60 6.34 -469.04 -2.97 -22.58 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.05 1.59 5.94 -2.39 -0.01 1.58 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.02 0.70 6.78 -2.39 -0.02 0.68 16 24 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 25 H 0.00 0.13 8.12 -2.39 -0.02 0.11 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 28 H 0.02 0.85 6.61 -2.39 -0.02 0.83 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.35 7.76 8.81 -89.69 -0.79 6.96 16 Total: -1.00 -63.81 257.04 -0.68 -64.49 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.29 Total: 8.35 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 3.51 Total: -13.53 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -6.50 Total: -106.50 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.81 -0.68 -64.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.293 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds