Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.58504 * 2 1 4 4 C 1.53191 * 109.58304 * 239.71349 * 2 1 3 5 5 C 1.53048 * 109.30723 * 185.57949 * 4 2 1 6 6 C 1.53043 * 109.53704 * 61.36605 * 5 4 2 7 7 C 1.53189 * 109.31260 * 298.63409 * 6 5 4 8 8 H 1.09003 * 109.58760 * 294.70044 * 7 6 5 9 9 C 1.52999 * 109.58512 * 174.42445 * 7 6 5 10 10 N 1.46909 * 109.47224 * 181.29517 * 9 7 6 11 11 N 1.46924 * 109.58188 * 120.42487 * 2 1 3 12 12 C 1.36940 * 120.63346 * 353.39310 * 11 2 1 13 13 H 1.08000 * 119.99627 * 125.69552 * 12 11 2 14 14 C 1.38811 * 119.99952 * 305.69544 * 12 11 2 15 15 N 1.31614 * 120.00028 * 340.99844 * 14 12 11 16 16 Si 1.86804 * 119.99670 * 160.99660 * 14 12 11 17 17 H 1.48502 * 109.47118 * 60.00386 * 16 14 12 18 18 H 1.48500 * 109.46906 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47180 * 300.00199 * 16 14 12 20 20 H 1.08997 * 109.47181 * 187.81097 * 1 2 3 21 21 H 1.09006 * 109.46988 * 307.81495 * 1 2 3 22 22 H 1.08997 * 109.46635 * 67.80887 * 1 2 3 23 23 H 1.09000 * 109.49751 * 305.52558 * 4 2 1 24 24 H 1.08990 * 109.50147 * 65.59820 * 4 2 1 25 25 H 1.08996 * 109.45756 * 181.38623 * 5 4 2 26 26 H 1.09001 * 109.46173 * 301.36079 * 5 4 2 27 27 H 1.09001 * 109.49893 * 58.58528 * 6 5 4 28 28 H 1.08998 * 109.49755 * 178.67917 * 6 5 4 29 29 H 1.09003 * 109.47348 * 301.29581 * 9 7 6 30 30 H 1.09005 * 109.47425 * 61.29577 * 9 7 6 31 31 H 1.00898 * 111.00104 * 180.02562 * 10 9 7 32 32 H 1.00905 * 110.99483 * 303.95425 * 10 9 7 33 33 H 0.97006 * 119.99544 * 185.06530 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5676 -0.8466 -1.1711 6 6 3.9569 -1.6659 0.0616 7 6 3.4650 -0.9486 1.3226 8 1 3.9922 -0.0010 1.4332 9 6 3.7271 -1.8271 2.5475 10 7 3.2265 -1.1505 3.7516 11 7 2.0225 -0.7010 1.1936 12 6 1.1536 -1.1157 2.1675 13 1 1.1463 -2.1494 2.4800 14 6 0.2823 -0.2074 2.7528 15 7 0.5224 1.0839 2.6671 16 14 -1.2311 -0.8178 3.6620 17 1 -0.8133 -1.6909 4.7882 18 1 -1.9917 0.3424 4.1917 19 1 -2.0909 -1.5900 2.7295 20 1 -0.3633 -1.0181 0.1397 21 1 -0.3633 0.6301 0.8119 22 1 -0.3632 0.3881 -0.9515 23 1 1.6030 -1.7238 -1.2934 24 1 1.7656 -0.1646 -2.1370 25 1 3.9378 -1.3423 -2.0684 26 1 4.0062 0.1486 -1.0988 27 1 3.4983 -2.6529 0.0021 28 1 5.0411 -1.7699 0.1017 29 1 3.2139 -2.7812 2.4270 30 1 4.7985 -2.0010 2.6474 31 1 3.3883 -1.7109 4.5750 32 1 3.6400 -0.2354 3.8504 33 1 -0.0448 1.7149 3.1374 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069722657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = 21.039618 kcal Electronic energy + Delta-G solvation = -13941.231679 eV Core-core repulsion = 11809.368719 eV Total energy + Delta-G solvation = -2131.862960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.93526 -33.90102 -33.11341 -30.43488 -29.81361 -26.44642 -24.56536 -23.53735 -20.77061 -19.86831 -18.94923 -16.02413 -15.27316 -14.38781 -14.22628 -13.80169 -13.41478 -13.07095 -12.76011 -12.36400 -12.18896 -11.33297 -11.07014 -10.82572 -10.77614 -10.48895 -10.37137 -10.29473 -10.08985 -9.83523 -9.58834 -9.42949 -9.07626 -7.86825 -7.27334 -5.95814 -5.43394 -3.08658 3.52796 3.56689 3.60303 4.71250 5.36446 5.48353 5.62800 5.75266 5.79919 5.91371 6.12803 6.27110 6.31538 6.44906 6.49304 6.58156 6.66083 6.76698 6.83218 6.86883 7.04023 7.08195 7.16696 7.30309 7.73148 7.92933 8.22913 8.26799 8.51183 8.96055 9.55628 10.06641 10.82786 11.56697 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.017295 C = 0.012989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.982221 B = 1618.589210 C = 2155.227235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.196 3.804 3 H 0.022 0.978 4 C -0.136 4.136 5 C -0.107 4.107 6 C -0.130 4.130 7 C 0.172 3.828 8 H 0.017 0.983 9 C 0.086 3.914 10 N -0.801 5.801 11 N -0.570 5.570 12 C -0.205 4.205 13 H 0.045 0.955 14 C 0.042 3.958 15 N -0.890 5.890 16 Si 0.877 3.123 17 H -0.283 1.283 18 H -0.296 1.296 19 H -0.286 1.286 20 H 0.046 0.954 21 H 0.089 0.911 22 H 0.016 0.984 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.062 0.938 30 H -0.003 1.003 31 H 0.314 0.686 32 H 0.331 0.669 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -3.402 -3.411 6.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.090 3.910 3 H 0.040 0.960 4 C -0.175 4.175 5 C -0.145 4.145 6 C -0.170 4.170 7 C 0.065 3.935 8 H 0.035 0.965 9 C -0.045 4.045 10 N -0.328 5.328 11 N -0.294 5.294 12 C -0.335 4.335 13 H 0.062 0.938 14 C -0.157 4.157 15 N -0.533 5.533 16 Si 0.707 3.293 17 H -0.209 1.209 18 H -0.222 1.222 19 H -0.213 1.213 20 H 0.065 0.935 21 H 0.108 0.892 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.015 0.985 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.197 -3.296 -3.722 6.506 hybrid contribution 0.260 -0.212 0.865 0.928 sum 4.457 -3.508 -2.856 6.351 Atomic orbital electron populations 1.22013 0.96032 1.02250 0.99783 1.20182 0.93225 0.93003 0.84566 0.95991 1.22199 0.94954 1.00986 0.99399 1.21353 0.97050 0.99337 0.96735 1.22020 0.98333 0.99573 0.97055 1.20544 0.88254 0.94196 0.90524 0.96548 1.21611 0.93224 0.97986 0.91671 1.58551 1.66360 1.05232 1.02659 1.43875 0.99273 1.67899 1.18396 1.18245 1.10752 0.91473 1.13026 0.93766 1.25298 0.99513 0.95174 0.95701 1.70012 1.38422 1.00721 1.44112 0.86826 0.84567 0.77708 0.80214 1.20907 1.22211 1.21277 0.93466 0.89240 0.96511 0.92771 0.93832 0.94011 0.93073 0.92549 0.93838 0.91946 0.98544 0.87512 0.85679 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 7.90 37.16 0.29 -3.10 16 2 C 0.20 4.61 3.05 -67.60 -0.21 4.40 16 3 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.14 -2.67 5.37 -26.61 -0.14 -2.81 16 5 C -0.11 -1.91 5.88 -26.68 -0.16 -2.06 16 6 C -0.13 -2.38 5.37 -26.61 -0.14 -2.53 16 7 C 0.17 3.68 3.13 -67.60 -0.21 3.47 16 8 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 9 C 0.09 1.70 5.64 -3.82 -0.02 1.68 16 10 N -0.80 -16.43 7.54 -10.36 -0.08 -16.50 16 11 N -0.57 -13.98 2.76 -157.29 -0.43 -14.42 16 12 C -0.20 -5.43 5.31 -15.06 -0.08 -5.51 16 13 H 0.04 1.24 7.21 -52.49 -0.38 0.86 16 14 C 0.04 1.15 3.36 -17.43 -0.06 1.09 16 15 N -0.89 -25.44 11.73 55.49 0.65 -24.79 16 16 Si 0.88 21.86 29.60 -169.99 -5.03 16.83 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H 0.05 1.14 7.59 -51.93 -0.39 0.74 16 21 H 0.09 2.37 4.98 -51.93 -0.26 2.11 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.29 7.57 -51.93 -0.39 0.89 16 30 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.31 5.57 9.08 -39.29 -0.36 5.22 16 32 H 0.33 6.81 8.99 -39.29 -0.35 6.45 16 33 H 0.25 7.00 8.32 -40.82 -0.34 6.66 16 LS Contribution 253.10 15.07 3.81 3.81 Total: -1.00 -28.46 253.10 -7.30 -35.76 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.50 Total: 4.65 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.73 Total: -5.36 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.14 Total: -55.71 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.46 -7.30 -35.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069722657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.803 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds