Wall clock time and date at job start Mon Mar 30 2020 02:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.58189 * 2 1 4 4 C 1.53195 * 109.58392 * 120.27739 * 2 1 3 5 5 C 1.53077 * 109.29168 * 65.44250 * 4 2 1 6 6 C 1.53036 * 109.65904 * 61.15284 * 5 4 2 7 7 C 1.53195 * 109.31036 * 298.69337 * 6 5 4 8 8 H 1.08996 * 109.59107 * 294.85301 * 7 6 5 9 9 C 1.53004 * 109.58677 * 174.42323 * 7 6 5 10 10 N 1.46898 * 109.46723 * 65.92728 * 9 7 6 11 11 N 1.46924 * 109.58804 * 239.71504 * 2 1 3 12 12 C 1.36936 * 120.63078 * 113.69970 * 11 2 1 13 13 H 1.07999 * 120.00188 * 148.47136 * 12 11 2 14 14 C 1.38810 * 119.99909 * 328.46926 * 12 11 2 15 15 N 1.31623 * 120.00071 * 343.46975 * 14 12 11 16 16 Si 1.86799 * 119.99994 * 163.46923 * 14 12 11 17 17 H 1.48502 * 109.47084 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47359 * 120.00283 * 16 14 12 19 19 H 1.48503 * 109.47238 * 240.00169 * 16 14 12 20 20 H 1.09004 * 109.46794 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47528 * 300.00058 * 1 2 3 22 22 H 1.09000 * 109.47160 * 60.00478 * 1 2 3 23 23 H 1.08999 * 109.49063 * 185.24632 * 4 2 1 24 24 H 1.08994 * 109.50077 * 305.34410 * 4 2 1 25 25 H 1.08999 * 109.34478 * 301.12511 * 5 4 2 26 26 H 1.09001 * 109.43765 * 181.23176 * 5 4 2 27 27 H 1.09002 * 109.49590 * 178.74667 * 6 5 4 28 28 H 1.08999 * 109.53138 * 58.66360 * 6 5 4 29 29 H 1.08998 * 109.47364 * 185.92630 * 9 7 6 30 30 H 1.09000 * 109.47387 * 305.93013 * 9 7 6 31 31 H 1.00899 * 111.00383 * 66.02508 * 10 9 7 32 32 H 1.00905 * 110.99675 * 189.97387 * 10 9 7 33 33 H 0.97006 * 119.99848 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 1.6473 -2.2043 1.1692 6 6 2.2858 -2.8448 -0.0653 7 6 1.7720 -2.1400 -1.3248 8 1 0.7017 -2.3167 -1.4315 9 6 2.5090 -2.6804 -2.5518 10 7 2.1578 -4.0928 -2.7511 11 7 2.0226 -0.6981 -1.1953 12 6 2.7027 -0.0178 -2.1699 13 1 3.4690 -0.5183 -2.7432 14 6 2.4072 1.3150 -2.4210 15 7 1.2838 1.8355 -1.9743 16 14 3.6038 2.3700 -3.3928 17 1 4.7832 1.5540 -3.7779 18 1 2.9335 2.8803 -4.6158 19 1 4.0463 3.5148 -2.5567 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.1294 -0.6464 1.2935 24 1 1.6055 -0.2772 2.1371 25 1 0.5624 -2.2838 1.0996 26 1 1.9925 -2.7199 2.0654 27 1 2.0202 -3.9012 -0.1056 28 1 3.3697 -2.7441 -0.0087 29 1 2.2192 -2.1063 -3.4319 30 1 3.5844 -2.5917 -2.3981 31 1 1.1833 -4.1926 -2.9929 32 1 2.7490 -4.5172 -3.4501 33 1 1.0774 2.7671 -2.1494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069722660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:45 Heat of formation + Delta-G solvation = 8.355720 kcal Electronic energy + Delta-G solvation = -13769.084057 eV Core-core repulsion = 11636.671081 eV Total energy + Delta-G solvation = -2132.412975 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.10383 -34.20467 -33.00326 -30.38854 -30.13995 -26.67973 -24.39654 -23.85400 -21.55455 -20.04616 -18.35745 -16.33696 -15.39330 -14.68594 -14.09779 -13.95663 -13.57169 -13.44173 -12.63531 -12.38287 -12.14114 -11.55692 -11.34392 -10.87115 -10.82813 -10.70535 -10.46524 -10.38960 -10.02259 -9.85202 -9.69410 -9.23362 -9.00583 -8.40210 -8.08113 -6.50635 -5.73482 -3.18405 3.37396 3.46110 3.47426 4.50819 5.01745 5.39786 5.62619 5.76698 5.85689 5.87912 6.07106 6.26089 6.43967 6.49781 6.54792 6.67470 6.75950 6.80773 6.87751 6.91351 7.00971 7.10223 7.16003 7.33892 7.59946 7.71964 7.82349 7.88469 7.96753 8.54469 9.29396 9.92195 10.51732 11.33268 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.015679 C = 0.011925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.347818 B = 1785.421222 C = 2347.474699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.195 3.805 3 H 0.085 0.915 4 C -0.136 4.136 5 C -0.112 4.112 6 C -0.117 4.117 7 C 0.180 3.820 8 H 0.021 0.979 9 C 0.068 3.932 10 N -0.853 5.853 11 N -0.583 5.583 12 C -0.251 4.251 13 H 0.064 0.936 14 C 0.006 3.994 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.290 1.290 20 H 0.024 0.976 21 H 0.024 0.976 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.333 0.667 32 H 0.332 0.668 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -6.561 2.002 6.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.088 3.912 3 H 0.103 0.897 4 C -0.175 4.175 5 C -0.150 4.150 6 C -0.156 4.156 7 C 0.074 3.926 8 H 0.039 0.961 9 C -0.062 4.062 10 N -0.382 5.382 11 N -0.306 5.306 12 C -0.381 4.381 13 H 0.082 0.918 14 C -0.193 4.193 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.216 1.216 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.573 -6.471 2.732 7.047 hybrid contribution 0.311 0.991 -1.447 1.781 sum 0.884 -5.480 1.284 5.697 Atomic orbital electron populations 1.22137 0.98823 0.98552 1.01057 1.20209 0.91727 0.96142 0.83093 0.89673 1.22145 1.00271 0.95697 0.99419 1.21461 1.00031 0.96412 0.97095 1.21873 0.99703 0.98396 0.95627 1.20276 0.95362 0.85352 0.91659 0.96117 1.21895 1.00013 0.85976 0.98296 1.58725 1.08351 1.17708 1.53387 1.44104 1.65307 1.02105 1.19118 1.19132 1.12097 0.93779 1.13129 0.91800 1.25088 0.96041 0.99039 0.99156 1.70020 1.21478 1.13221 1.49214 0.86332 0.80935 0.80697 0.79435 1.20378 1.21891 1.21646 0.95667 0.95742 0.90338 0.93092 0.93699 0.92787 0.94224 0.92546 0.93105 0.94319 0.91561 0.85546 0.85692 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.82 37.16 0.33 -3.01 16 2 C 0.19 4.64 2.31 -67.60 -0.16 4.48 16 3 H 0.09 2.30 6.32 -51.93 -0.33 1.97 16 4 C -0.14 -2.76 5.56 -26.59 -0.15 -2.91 16 5 C -0.11 -2.08 5.67 -26.67 -0.15 -2.24 16 6 C -0.12 -2.25 5.21 -26.61 -0.14 -2.39 16 7 C 0.18 3.86 2.75 -67.60 -0.19 3.68 16 8 H 0.02 0.48 7.49 -51.93 -0.39 0.09 16 9 C 0.07 1.33 4.93 -3.82 -0.02 1.31 16 10 N -0.85 -13.25 9.19 -10.37 -0.10 -13.35 16 11 N -0.58 -14.41 2.68 -157.28 -0.42 -14.83 16 12 C -0.25 -6.74 8.42 -15.06 -0.13 -6.86 16 13 H 0.06 1.69 6.39 -52.49 -0.34 1.36 16 14 C 0.01 0.16 4.90 -17.43 -0.09 0.07 16 15 N -0.90 -25.32 10.04 55.49 0.56 -24.76 16 16 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H 0.02 0.53 5.74 -51.93 -0.30 0.24 16 21 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.08 2.02 6.83 -51.93 -0.35 1.67 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.00 6.51 -51.93 -0.34 0.66 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.02 7.95 -51.93 -0.41 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.82 7.33 -51.93 -0.38 0.44 16 30 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 31 H 0.33 4.82 9.08 -39.29 -0.36 4.46 16 32 H 0.33 4.38 9.08 -39.29 -0.36 4.03 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 250.85 15.07 3.78 3.78 Total: -1.00 -27.96 250.85 -7.09 -35.06 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.20 Total: 5.45 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.68 Total: -7.87 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.04 Total: -52.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.96 -7.09 -35.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069722660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.411 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds