Wall clock time and date at job start Mon Mar 30 2020 02:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.58189 * 2 1 4 4 C 1.53195 * 109.58392 * 120.27739 * 2 1 3 5 5 C 1.53077 * 109.29168 * 65.44250 * 4 2 1 6 6 C 1.53036 * 109.65904 * 61.15284 * 5 4 2 7 7 C 1.53195 * 109.31036 * 298.69337 * 6 5 4 8 8 H 1.08996 * 109.59107 * 294.85301 * 7 6 5 9 9 C 1.53004 * 109.58677 * 174.42323 * 7 6 5 10 10 N 1.46898 * 109.46723 * 65.92728 * 9 7 6 11 11 N 1.46924 * 109.58804 * 239.71504 * 2 1 3 12 12 C 1.36936 * 120.63078 * 113.69970 * 11 2 1 13 13 H 1.07999 * 120.00188 * 148.47136 * 12 11 2 14 14 C 1.38810 * 119.99909 * 328.46926 * 12 11 2 15 15 N 1.31623 * 120.00071 * 343.46975 * 14 12 11 16 16 Si 1.86799 * 119.99994 * 163.46923 * 14 12 11 17 17 H 1.48502 * 109.47084 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47359 * 120.00283 * 16 14 12 19 19 H 1.48503 * 109.47238 * 240.00169 * 16 14 12 20 20 H 1.09004 * 109.46794 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47528 * 300.00058 * 1 2 3 22 22 H 1.09000 * 109.47160 * 60.00478 * 1 2 3 23 23 H 1.08999 * 109.49063 * 185.24632 * 4 2 1 24 24 H 1.08994 * 109.50077 * 305.34410 * 4 2 1 25 25 H 1.08999 * 109.34478 * 301.12511 * 5 4 2 26 26 H 1.09001 * 109.43765 * 181.23176 * 5 4 2 27 27 H 1.09002 * 109.49590 * 178.74667 * 6 5 4 28 28 H 1.08999 * 109.53138 * 58.66360 * 6 5 4 29 29 H 1.08998 * 109.47364 * 185.92630 * 9 7 6 30 30 H 1.09000 * 109.47387 * 305.93013 * 9 7 6 31 31 H 1.00899 * 111.00383 * 66.02508 * 10 9 7 32 32 H 1.00905 * 110.99675 * 189.97387 * 10 9 7 33 33 H 0.97006 * 119.99848 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 1.6473 -2.2043 1.1692 6 6 2.2858 -2.8448 -0.0653 7 6 1.7720 -2.1400 -1.3248 8 1 0.7017 -2.3167 -1.4315 9 6 2.5090 -2.6804 -2.5518 10 7 2.1578 -4.0928 -2.7511 11 7 2.0226 -0.6981 -1.1953 12 6 2.7027 -0.0178 -2.1699 13 1 3.4690 -0.5183 -2.7432 14 6 2.4072 1.3150 -2.4210 15 7 1.2838 1.8355 -1.9743 16 14 3.6038 2.3700 -3.3928 17 1 4.7832 1.5540 -3.7779 18 1 2.9335 2.8803 -4.6158 19 1 4.0463 3.5148 -2.5567 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.1294 -0.6464 1.2935 24 1 1.6055 -0.2772 2.1371 25 1 0.5624 -2.2838 1.0996 26 1 1.9925 -2.7199 2.0654 27 1 2.0202 -3.9012 -0.1056 28 1 3.3697 -2.7441 -0.0087 29 1 2.2192 -2.1063 -3.4319 30 1 3.5844 -2.5917 -2.3981 31 1 1.1833 -4.1926 -2.9929 32 1 2.7490 -4.5172 -3.4501 33 1 1.0774 2.7671 -2.1494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069722660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:45 Heat of formation + Delta-G solvation = -10.338513 kcal Electronic energy + Delta-G solvation = -13769.894700 eV Core-core repulsion = 11636.671081 eV Total energy + Delta-G solvation = -2133.223618 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83273 -35.74801 -34.89224 -32.05962 -31.97914 -28.48034 -26.13861 -25.63801 -23.26178 -21.74354 -20.15550 -18.12026 -17.20746 -16.32085 -15.80115 -15.72502 -15.26319 -15.07644 -14.36831 -14.00455 -13.89506 -13.26613 -13.13445 -12.75100 -12.67470 -12.44422 -12.25070 -12.15349 -11.90873 -11.56910 -11.34661 -10.92779 -10.81442 -10.41492 -9.49225 -8.48088 -7.78590 -5.25581 1.44313 1.47859 1.56281 2.53176 3.33279 3.47746 4.06576 4.16087 4.24616 4.30696 4.44933 4.64109 4.78466 4.85217 4.87846 5.00604 5.07742 5.13924 5.21145 5.33825 5.39710 5.43128 5.48452 5.65390 5.70613 5.82992 6.07637 6.26255 6.50853 6.70097 7.26239 7.97404 8.50833 9.25431 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.015679 C = 0.011925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.347818 B = 1785.421222 C = 2347.474699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.189 3.811 3 H 0.046 0.954 4 C -0.129 4.129 5 C -0.108 4.108 6 C -0.107 4.107 7 C 0.175 3.825 8 H 0.010 0.990 9 C 0.082 3.918 10 N -0.842 5.842 11 N -0.598 5.598 12 C -0.255 4.255 13 H 0.064 0.936 14 C -0.045 4.045 15 N -0.921 5.921 16 Si 0.954 3.046 17 H -0.270 1.270 18 H -0.295 1.295 19 H -0.294 1.294 20 H 0.036 0.964 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.013 0.987 30 H 0.058 0.942 31 H 0.343 0.657 32 H 0.349 0.651 33 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -8.086 2.679 8.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.083 3.917 3 H 0.064 0.936 4 C -0.168 4.168 5 C -0.145 4.145 6 C -0.146 4.146 7 C 0.069 3.931 8 H 0.027 0.973 9 C -0.049 4.049 10 N -0.372 5.372 11 N -0.321 5.321 12 C -0.385 4.385 13 H 0.081 0.919 14 C -0.241 4.241 15 N -0.566 5.566 16 Si 0.783 3.217 17 H -0.194 1.194 18 H -0.222 1.222 19 H -0.221 1.221 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.982 -8.034 3.405 8.781 hybrid contribution 0.166 1.409 -1.663 2.186 sum 1.148 -6.625 1.743 6.946 Atomic orbital electron populations 1.21947 0.98238 0.98878 1.00139 1.20189 0.92171 0.94743 0.84615 0.93554 1.22019 0.99746 0.96874 0.98124 1.21445 1.00142 0.95013 0.97944 1.21761 0.99084 0.99099 0.94661 1.20440 0.95006 0.83839 0.93837 0.97273 1.21596 0.99108 0.87750 0.96450 1.58625 1.09386 1.14907 1.54288 1.44333 1.65267 1.03481 1.19066 1.19375 1.11954 0.94102 1.13093 0.91878 1.25736 0.97429 1.00206 1.00699 1.70172 1.22825 1.12931 1.50697 0.85413 0.79348 0.79010 0.77885 1.19444 1.22243 1.22067 0.94509 0.93986 0.93898 0.93851 0.91745 0.92529 0.91220 0.90709 0.93877 0.96888 0.92363 0.84524 0.83830 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.82 71.98 0.63 -5.38 16 2 C 0.19 8.99 2.31 44.98 0.10 9.10 16 3 H 0.05 2.55 6.32 -2.39 -0.02 2.54 16 4 C -0.13 -4.98 5.56 30.68 0.17 -4.81 16 5 C -0.11 -3.65 5.67 30.63 0.17 -3.48 16 6 C -0.11 -3.84 5.21 30.67 0.16 -3.68 16 7 C 0.17 7.30 2.75 44.98 0.12 7.43 16 8 H 0.01 0.42 7.49 -2.39 -0.02 0.41 16 9 C 0.08 3.11 4.93 86.30 0.43 3.54 16 10 N -0.84 -24.23 9.19 -186.72 -1.72 -25.95 16 11 N -0.60 -29.55 2.68 -651.53 -1.75 -31.30 16 12 C -0.25 -13.77 8.42 84.03 0.71 -13.07 16 13 H 0.06 3.36 6.39 -2.91 -0.02 3.34 16 14 C -0.04 -2.47 4.90 84.86 0.42 -2.05 16 15 N -0.92 -53.43 10.04 21.65 0.22 -53.21 16 16 Si 0.95 45.01 29.58 68.60 2.03 47.04 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H 0.04 1.53 5.74 -2.38 -0.01 1.52 16 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.04 2.23 6.83 -2.39 -0.02 2.22 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 1.90 6.51 -2.39 -0.02 1.89 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 2.43 7.95 -2.39 -0.02 2.41 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.01 0.55 7.33 -2.39 -0.02 0.53 16 30 H 0.06 2.29 7.72 -2.39 -0.02 2.28 16 31 H 0.34 9.12 9.08 -89.69 -0.81 8.30 16 32 H 0.35 8.32 9.08 -89.69 -0.81 7.51 16 33 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -59.74 250.85 1.17 -58.57 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.53 Total: 17.26 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 2.92 Total: -12.40 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -3.25 Total: -110.46 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -59.74 1.17 -58.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069722660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.232 kcal (2) G-P(sol) polarization free energy of solvation -59.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds