Wall clock time and date at job start Mon Mar 30 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.58453 * 2 1 4 4 C 1.53185 * 109.70496 * 239.64061 * 2 1 3 5 5 C 1.53038 * 109.31588 * 294.77928 * 4 2 1 6 6 C 1.53045 * 109.53499 * 298.63477 * 5 4 2 7 7 C 1.53199 * 109.31249 * 61.36536 * 6 5 4 8 8 H 1.08999 * 109.58313 * 65.14794 * 7 6 5 9 9 C 1.52993 * 109.70012 * 185.50585 * 7 6 5 10 10 N 1.46900 * 109.47604 * 294.55081 * 9 7 6 11 11 N 1.46921 * 109.58509 * 120.27999 * 2 1 3 12 12 C 1.36939 * 120.63388 * 246.34786 * 11 2 1 13 13 H 1.08000 * 120.00220 * 209.71681 * 12 11 2 14 14 C 1.38817 * 119.99895 * 29.70460 * 12 11 2 15 15 N 1.31615 * 119.99948 * 11.07729 * 14 12 11 16 16 Si 1.86799 * 120.00005 * 191.06672 * 14 12 11 17 17 H 1.48500 * 109.47048 * 60.00338 * 16 14 12 18 18 H 1.48503 * 109.47101 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46977 * 300.00571 * 16 14 12 20 20 H 1.08997 * 109.47200 * 300.00645 * 1 2 3 21 21 H 1.09003 * 109.46713 * 60.00107 * 1 2 3 22 22 H 1.09002 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.49690 * 54.73003 * 4 2 1 24 24 H 1.08995 * 109.49850 * 174.82618 * 4 2 1 25 25 H 1.08997 * 109.46255 * 178.61741 * 5 4 2 26 26 H 1.09002 * 109.46246 * 58.65413 * 5 4 2 27 27 H 1.08993 * 109.50163 * 301.41293 * 6 5 4 28 28 H 1.09006 * 109.52025 * 181.32766 * 6 5 4 29 29 H 1.08996 * 109.47336 * 54.55403 * 9 7 6 30 30 H 1.09002 * 109.46690 * 174.55239 * 9 7 6 31 31 H 1.00894 * 111.00615 * 174.62473 * 10 9 7 32 32 H 1.00899 * 111.00296 * 298.58838 * 10 9 7 33 33 H 0.96998 * 119.99996 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 1.6474 -2.2044 -1.1690 6 6 2.2858 -2.8448 0.0657 7 6 1.7719 -2.1398 1.3251 8 1 0.7017 -2.3166 1.4317 9 6 2.5060 -2.6796 2.5541 10 7 2.1622 -4.0946 2.7477 11 7 2.0225 -0.6980 1.1954 12 6 2.7018 -0.0175 2.1704 13 1 3.4476 -0.5255 2.7638 14 6 2.4319 1.3254 2.3961 15 7 1.3839 1.8894 1.8340 16 14 3.5559 2.3317 3.4976 17 1 4.9301 2.3317 2.9348 18 1 3.0526 3.7267 3.5761 19 1 3.5781 1.7366 4.8579 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6107 -0.2793 -2.1365 24 1 3.1326 -0.6477 -1.2890 25 1 1.9924 -2.7202 -2.0650 26 1 0.5625 -2.2840 -1.0994 27 1 3.3695 -2.7436 0.0088 28 1 2.0206 -3.9013 0.1064 29 1 3.5816 -2.5840 2.4060 30 1 2.2083 -2.1097 3.4344 31 1 2.7004 -4.4980 3.4998 32 1 1.1727 -4.2074 2.9102 33 1 1.1951 2.8277 1.9920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069722663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:47 Heat of formation + Delta-G solvation = 9.595067 kcal Electronic energy + Delta-G solvation = -13774.624363 eV Core-core repulsion = 11642.265130 eV Total energy + Delta-G solvation = -2132.359233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.10864 -34.21570 -33.01406 -30.37897 -30.10575 -26.67010 -24.39508 -23.87383 -21.52731 -20.06269 -18.33578 -16.37042 -15.39648 -14.64470 -14.08077 -13.92967 -13.60980 -13.42872 -12.63549 -12.37473 -12.12641 -11.53594 -11.33869 -10.89704 -10.80417 -10.71318 -10.47633 -10.37470 -10.01333 -9.85188 -9.67496 -9.19989 -9.04284 -8.38322 -8.08833 -6.51431 -5.70922 -3.17378 3.38990 3.45012 3.45825 4.50911 5.01853 5.41491 5.62274 5.77434 5.87047 5.88238 6.08088 6.24444 6.43634 6.51450 6.55454 6.68014 6.76921 6.82243 6.89355 6.91868 7.01657 7.11665 7.17349 7.33664 7.58940 7.79496 7.82473 7.87282 7.97292 8.55556 9.30958 9.93291 10.50825 11.35217 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.015758 C = 0.011854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.635525 B = 1776.416567 C = 2361.557452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.190 3.810 3 H 0.098 0.902 4 C -0.136 4.136 5 C -0.113 4.113 6 C -0.117 4.117 7 C 0.180 3.820 8 H 0.021 0.979 9 C 0.068 3.932 10 N -0.853 5.853 11 N -0.584 5.584 12 C -0.248 4.248 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.901 5.901 16 Si 0.900 3.100 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 H 0.072 0.928 21 H 0.024 0.976 22 H 0.022 0.978 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.332 0.668 32 H 0.333 0.667 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 -6.558 -1.728 6.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.084 3.916 3 H 0.116 0.884 4 C -0.175 4.175 5 C -0.150 4.150 6 C -0.156 4.156 7 C 0.073 3.927 8 H 0.038 0.962 9 C -0.062 4.062 10 N -0.382 5.382 11 N -0.307 5.307 12 C -0.378 4.378 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.731 3.269 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.212 1.212 20 H 0.091 0.909 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.370 -6.460 -2.440 6.916 hybrid contribution 0.206 0.925 1.508 1.781 sum 0.575 -5.535 -0.933 5.643 Atomic orbital electron populations 1.22089 0.98972 0.98251 1.00808 1.20349 0.91579 0.96954 0.82719 0.88433 1.22148 1.00245 0.95591 0.99564 1.21463 0.99982 0.96554 0.97040 1.21876 0.99767 0.98326 0.95638 1.20282 0.95302 0.85469 0.91681 0.96178 1.21905 1.00184 0.85920 0.98222 1.58744 1.10331 1.18259 1.50824 1.44113 1.65188 1.02045 1.19391 1.19114 1.13462 0.93019 1.12240 0.91738 1.25082 0.96717 0.98576 0.99207 1.69954 1.26127 1.11824 1.46692 0.86408 0.80461 0.79458 0.80606 1.21142 1.21699 1.21160 0.90865 0.95679 0.95853 0.93773 0.93124 0.94257 0.92809 0.93064 0.92603 0.91467 0.94447 0.85682 0.85548 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.80 37.16 0.33 -2.92 16 2 C 0.19 4.55 2.31 -67.60 -0.16 4.40 16 3 H 0.10 2.65 5.98 -51.93 -0.31 2.34 16 4 C -0.14 -2.79 5.56 -26.62 -0.15 -2.94 16 5 C -0.11 -2.10 5.68 -26.69 -0.15 -2.25 16 6 C -0.12 -2.26 5.20 -26.61 -0.14 -2.39 16 7 C 0.18 3.84 2.73 -67.60 -0.18 3.66 16 8 H 0.02 0.46 7.49 -51.93 -0.39 0.07 16 9 C 0.07 1.32 4.93 -3.83 -0.02 1.30 16 10 N -0.85 -13.23 9.19 -10.37 -0.10 -13.33 16 11 N -0.58 -14.45 2.70 -157.29 -0.42 -14.88 16 12 C -0.25 -6.65 8.53 -15.06 -0.13 -6.78 16 13 H 0.07 1.69 6.28 -52.49 -0.33 1.36 16 14 C 0.00 0.07 5.05 -17.43 -0.09 -0.02 16 15 N -0.90 -25.41 9.71 55.49 0.54 -24.87 16 16 Si 0.90 21.59 29.57 -169.99 -5.03 16.56 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H 0.07 1.88 7.04 -51.93 -0.37 1.51 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.02 0.49 5.74 -51.93 -0.30 0.19 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 1.00 6.51 -51.93 -0.34 0.66 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.01 7.94 -51.93 -0.41 0.59 16 29 H 0.07 1.36 7.71 -51.93 -0.40 0.96 16 30 H 0.04 0.79 7.34 -51.93 -0.38 0.41 16 31 H 0.33 4.38 9.08 -39.29 -0.36 4.03 16 32 H 0.33 4.81 9.05 -39.29 -0.36 4.45 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 250.46 15.07 3.77 3.77 Total: -1.00 -27.84 250.46 -7.11 -34.95 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.19 Total: 5.74 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.69 Total: -7.95 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.02 Total: -53.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.84 -7.11 -34.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069722663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.540 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds