Wall clock time and date at job start Mon Mar 30 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.58453 * 2 1 4 4 C 1.53185 * 109.70496 * 239.64061 * 2 1 3 5 5 C 1.53038 * 109.31588 * 294.77928 * 4 2 1 6 6 C 1.53045 * 109.53499 * 298.63477 * 5 4 2 7 7 C 1.53199 * 109.31249 * 61.36536 * 6 5 4 8 8 H 1.08999 * 109.58313 * 65.14794 * 7 6 5 9 9 C 1.52993 * 109.70012 * 185.50585 * 7 6 5 10 10 N 1.46900 * 109.47604 * 294.55081 * 9 7 6 11 11 N 1.46921 * 109.58509 * 120.27999 * 2 1 3 12 12 C 1.36939 * 120.63388 * 246.34786 * 11 2 1 13 13 H 1.08000 * 120.00220 * 209.71681 * 12 11 2 14 14 C 1.38817 * 119.99895 * 29.70460 * 12 11 2 15 15 N 1.31615 * 119.99948 * 11.07729 * 14 12 11 16 16 Si 1.86799 * 120.00005 * 191.06672 * 14 12 11 17 17 H 1.48500 * 109.47048 * 60.00338 * 16 14 12 18 18 H 1.48503 * 109.47101 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46977 * 300.00571 * 16 14 12 20 20 H 1.08997 * 109.47200 * 300.00645 * 1 2 3 21 21 H 1.09003 * 109.46713 * 60.00107 * 1 2 3 22 22 H 1.09002 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.49690 * 54.73003 * 4 2 1 24 24 H 1.08995 * 109.49850 * 174.82618 * 4 2 1 25 25 H 1.08997 * 109.46255 * 178.61741 * 5 4 2 26 26 H 1.09002 * 109.46246 * 58.65413 * 5 4 2 27 27 H 1.08993 * 109.50163 * 301.41293 * 6 5 4 28 28 H 1.09006 * 109.52025 * 181.32766 * 6 5 4 29 29 H 1.08996 * 109.47336 * 54.55403 * 9 7 6 30 30 H 1.09002 * 109.46690 * 174.55239 * 9 7 6 31 31 H 1.00894 * 111.00615 * 174.62473 * 10 9 7 32 32 H 1.00899 * 111.00296 * 298.58838 * 10 9 7 33 33 H 0.96998 * 119.99996 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 1.6474 -2.2044 -1.1690 6 6 2.2858 -2.8448 0.0657 7 6 1.7719 -2.1398 1.3251 8 1 0.7017 -2.3166 1.4317 9 6 2.5060 -2.6796 2.5541 10 7 2.1622 -4.0946 2.7477 11 7 2.0225 -0.6980 1.1954 12 6 2.7018 -0.0175 2.1704 13 1 3.4476 -0.5255 2.7638 14 6 2.4319 1.3254 2.3961 15 7 1.3839 1.8894 1.8340 16 14 3.5559 2.3317 3.4976 17 1 4.9301 2.3317 2.9348 18 1 3.0526 3.7267 3.5761 19 1 3.5781 1.7366 4.8579 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6107 -0.2793 -2.1365 24 1 3.1326 -0.6477 -1.2890 25 1 1.9924 -2.7202 -2.0650 26 1 0.5625 -2.2840 -1.0994 27 1 3.3695 -2.7436 0.0088 28 1 2.0206 -3.9013 0.1064 29 1 3.5816 -2.5840 2.4060 30 1 2.2083 -2.1097 3.4344 31 1 2.7004 -4.4980 3.4998 32 1 1.1727 -4.2074 2.9102 33 1 1.1951 2.8277 1.9920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069722663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:47 Heat of formation + Delta-G solvation = -8.955301 kcal Electronic energy + Delta-G solvation = -13775.428767 eV Core-core repulsion = 11642.265130 eV Total energy + Delta-G solvation = -2133.163638 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83903 -35.76075 -34.89808 -32.05811 -31.93898 -28.47146 -26.14268 -25.65058 -23.23698 -21.75911 -20.13754 -18.15122 -17.21375 -16.28893 -15.76184 -15.68234 -15.29216 -15.08628 -14.37417 -13.99045 -13.87353 -13.25206 -13.10856 -12.74610 -12.68704 -12.45964 -12.25705 -12.16129 -11.88346 -11.57675 -11.34074 -10.89975 -10.86876 -10.36371 -9.49796 -8.48240 -7.75885 -5.24067 1.46750 1.48670 1.54422 2.53900 3.36211 3.48010 4.05732 4.16257 4.25652 4.30890 4.45498 4.63179 4.77751 4.86633 4.88022 5.02402 5.09138 5.13837 5.21792 5.33668 5.39855 5.43067 5.48754 5.65173 5.70405 5.88490 6.09384 6.25918 6.51951 6.69548 7.27467 7.99035 8.50275 9.27366 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.015758 C = 0.011854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.635525 B = 1776.416567 C = 2361.557452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.184 3.816 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.108 4.108 6 C -0.107 4.107 7 C 0.174 3.826 8 H 0.011 0.989 9 C 0.082 3.918 10 N -0.842 5.842 11 N -0.599 5.599 12 C -0.253 4.253 13 H 0.066 0.934 14 C -0.048 4.048 15 N -0.924 5.924 16 Si 0.958 3.042 17 H -0.282 1.282 18 H -0.296 1.296 19 H -0.280 1.280 20 H 0.037 0.963 21 H 0.041 0.959 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.013 0.987 31 H 0.349 0.651 32 H 0.343 0.657 33 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -8.101 -2.284 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.078 3.922 3 H 0.077 0.923 4 C -0.168 4.168 5 C -0.146 4.146 6 C -0.146 4.146 7 C 0.068 3.932 8 H 0.029 0.971 9 C -0.050 4.050 10 N -0.372 5.372 11 N -0.323 5.323 12 C -0.384 4.384 13 H 0.083 0.917 14 C -0.244 4.244 15 N -0.570 5.570 16 Si 0.788 3.212 17 H -0.209 1.209 18 H -0.223 1.223 19 H -0.206 1.206 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.673 -8.041 -2.992 8.606 hybrid contribution 0.098 1.349 1.681 2.158 sum 0.772 -6.692 -1.311 6.862 Atomic orbital electron populations 1.21898 0.98327 0.98615 0.99862 1.20306 0.92074 0.95590 0.84232 0.92280 1.22019 0.99612 0.96857 0.98323 1.21444 1.00138 0.95085 0.97897 1.21767 0.99074 0.99085 0.94706 1.20445 0.95039 0.83904 0.93795 0.97149 1.21606 0.99214 0.87714 0.96417 1.58645 1.11337 1.15421 1.51802 1.44338 1.65156 1.03454 1.19332 1.19383 1.13391 0.93363 1.12262 0.91682 1.25737 0.98093 0.99660 1.00908 1.70129 1.27477 1.11417 1.48026 0.85487 0.78807 0.77701 0.79251 1.20851 1.22269 1.20605 0.94390 0.94009 0.94618 0.91892 0.94037 0.91309 0.92472 0.93957 0.90694 0.92378 0.96905 0.83840 0.84502 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.80 71.98 0.63 -5.16 16 2 C 0.18 8.80 2.31 44.97 0.10 8.91 16 3 H 0.06 3.28 5.98 -2.39 -0.01 3.27 16 4 C -0.13 -5.05 5.56 30.67 0.17 -4.88 16 5 C -0.11 -3.68 5.68 30.62 0.17 -3.51 16 6 C -0.11 -3.86 5.20 30.68 0.16 -3.70 16 7 C 0.17 7.26 2.73 44.97 0.12 7.38 16 8 H 0.01 0.47 7.49 -2.39 -0.02 0.46 16 9 C 0.08 3.09 4.93 86.30 0.43 3.51 16 10 N -0.84 -24.15 9.19 -186.73 -1.72 -25.87 16 11 N -0.60 -29.65 2.70 -651.55 -1.76 -31.41 16 12 C -0.25 -13.70 8.53 84.03 0.72 -12.99 16 13 H 0.07 3.44 6.28 -2.91 -0.02 3.42 16 14 C -0.05 -2.68 5.05 84.86 0.43 -2.25 16 15 N -0.92 -53.47 9.71 21.65 0.21 -53.26 16 16 Si 0.96 45.03 29.57 68.60 2.03 47.06 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H 0.04 1.96 7.04 -2.39 -0.02 1.95 16 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.03 1.48 5.74 -2.39 -0.01 1.47 16 23 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.93 6.51 -2.39 -0.02 1.91 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 2.43 7.94 -2.38 -0.02 2.41 16 29 H 0.06 2.29 7.71 -2.39 -0.02 2.28 16 30 H 0.01 0.54 7.34 -2.39 -0.02 0.52 16 31 H 0.35 8.32 9.08 -89.70 -0.81 7.50 16 32 H 0.34 9.06 9.05 -89.69 -0.81 8.25 16 33 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -59.43 250.46 1.17 -58.25 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.52 Total: 17.93 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 2.93 Total: -12.70 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.27 Total: -110.54 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -59.43 1.17 -58.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069722663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.299 kcal (2) G-P(sol) polarization free energy of solvation -59.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds