Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.70551 * 2 1 4 4 C 1.53192 * 109.59083 * 120.35810 * 2 1 3 5 5 C 1.53039 * 109.34200 * 174.43765 * 4 2 1 6 6 C 1.53034 * 109.53791 * 298.61677 * 5 4 2 7 7 C 1.53199 * 109.31118 * 61.36681 * 6 5 4 8 8 H 1.09000 * 109.58434 * 65.29562 * 7 6 5 9 9 C 1.52999 * 109.58315 * 185.57536 * 7 6 5 10 10 N 1.46903 * 109.47406 * 296.44666 * 9 7 6 11 11 N 1.46917 * 108.77598 * 305.36152 * 7 6 5 12 12 C 1.36933 * 120.63270 * 233.62879 * 11 7 6 13 13 H 1.08001 * 119.99953 * 54.70903 * 12 11 7 14 14 C 1.38819 * 120.00404 * 234.70846 * 12 11 7 15 15 N 1.31614 * 119.99394 * 20.70275 * 14 12 11 16 16 Si 1.86804 * 120.00034 * 200.70710 * 14 12 11 17 17 H 1.48493 * 109.47066 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47032 * 119.99886 * 16 14 12 19 19 H 1.48499 * 109.46893 * 239.99774 * 16 14 12 20 20 H 1.08998 * 109.47202 * 291.12070 * 1 2 3 21 21 H 1.09001 * 109.47361 * 51.12356 * 1 2 3 22 22 H 1.09000 * 109.46888 * 171.11965 * 1 2 3 23 23 H 1.08999 * 109.49466 * 54.46968 * 4 2 1 24 24 H 1.08999 * 109.49054 * 294.40868 * 4 2 1 25 25 H 1.09002 * 109.46020 * 58.64194 * 5 4 2 26 26 H 1.08996 * 109.45939 * 178.59655 * 5 4 2 27 27 H 1.08999 * 109.49877 * 181.31458 * 6 5 4 28 28 H 1.08993 * 109.50244 * 301.41277 * 6 5 4 29 29 H 1.08998 * 109.47705 * 56.45524 * 9 7 6 30 30 H 1.09010 * 109.46810 * 176.45470 * 9 7 6 31 31 H 1.00900 * 110.99948 * 173.78895 * 10 9 7 32 32 H 1.00892 * 111.00144 * 297.74472 * 10 9 7 33 33 H 0.97000 * 119.99535 * 183.92753 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5676 -0.8480 1.1708 6 6 3.9576 -1.6660 -0.0623 7 6 3.4663 -0.9474 -1.3230 8 1 3.9935 0.0004 -1.4322 9 6 3.7292 -1.8247 -2.5487 10 7 5.1765 -2.0142 -2.7140 11 7 2.0238 -0.7001 -1.1946 12 6 1.1554 -1.1142 -2.1690 13 1 1.1438 -2.1490 -2.4777 14 6 0.2900 -0.2038 -2.7601 15 7 0.5538 1.0845 -2.7075 16 14 -1.2490 -0.8075 -3.6300 17 1 -1.3145 -2.2887 -3.5491 18 1 -2.4479 -0.2221 -2.9780 19 1 -1.2076 -0.3913 -5.0549 20 1 -0.3633 0.3703 0.9586 21 1 -0.3634 0.6450 -0.8000 22 1 -0.3633 -1.0154 -0.1586 23 1 1.6030 -1.7253 1.2912 24 1 1.7655 -0.1671 2.1368 25 1 4.0062 0.1474 1.1001 26 1 3.9374 -1.3446 2.0678 27 1 5.0419 -1.7698 -0.1020 28 1 3.4991 -2.6530 -0.0042 29 1 3.2491 -2.7936 -2.4117 30 1 3.3226 -1.3399 -3.4364 31 1 5.3729 -2.6709 -3.4544 32 1 5.6400 -1.1335 -2.8794 33 1 -0.0787 1.7243 -3.0702 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069722666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = 6.963481 kcal Electronic energy + Delta-G solvation = -13764.365917 eV Core-core repulsion = 11631.892570 eV Total energy + Delta-G solvation = -2132.473347 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.96054 -34.19733 -33.18227 -30.57370 -30.26211 -26.21341 -24.71514 -23.92324 -20.93354 -19.72621 -19.01989 -16.25833 -15.48268 -14.60911 -14.30036 -13.89992 -13.50866 -13.15659 -12.91153 -12.52817 -12.35093 -11.32225 -11.27698 -10.90617 -10.87540 -10.61865 -10.48986 -10.42290 -10.14964 -9.83921 -9.65399 -9.44512 -9.23323 -8.07889 -8.01486 -6.32748 -5.65290 -3.52300 3.31448 3.41734 3.44815 4.45702 5.05648 5.30614 5.62796 5.76115 5.83996 5.90000 6.10627 6.30701 6.44823 6.50178 6.54437 6.73121 6.75857 6.82643 6.89539 6.92129 7.03829 7.05898 7.10981 7.33165 7.63727 7.69786 7.76438 7.88573 7.97075 8.67235 9.27681 9.79886 10.58924 11.19449 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032220 B = 0.015984 C = 0.011879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.813742 B = 1751.379076 C = 2356.596039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.194 3.806 3 H 0.024 0.976 4 C -0.135 4.135 5 C -0.111 4.111 6 C -0.118 4.118 7 C 0.181 3.819 8 H 0.018 0.982 9 C 0.075 3.925 10 N -0.855 5.855 11 N -0.579 5.579 12 C -0.264 4.264 13 H 0.049 0.951 14 C 0.038 3.962 15 N -0.872 5.872 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.289 1.289 20 H 0.021 0.979 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.331 0.669 32 H 0.332 0.668 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 -3.044 3.098 5.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.088 3.912 3 H 0.042 0.958 4 C -0.174 4.174 5 C -0.149 4.149 6 C -0.157 4.157 7 C 0.075 3.925 8 H 0.036 0.964 9 C -0.055 4.055 10 N -0.383 5.383 11 N -0.304 5.304 12 C -0.394 4.394 13 H 0.066 0.934 14 C -0.164 4.164 15 N -0.512 5.512 16 Si 0.705 3.295 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.216 1.216 20 H 0.040 0.960 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.946 -3.165 3.726 6.283 hybrid contribution -1.087 0.261 -1.381 1.777 sum 2.858 -2.903 2.345 4.701 Atomic orbital electron populations 1.21949 0.96132 1.02290 0.99439 1.20228 0.93036 0.93163 0.84746 0.95782 1.22166 0.95401 1.00857 0.98973 1.21424 0.96582 0.99528 0.97384 1.21886 0.99481 0.98672 0.95630 1.20339 0.86592 0.94103 0.91478 0.96395 1.21780 0.85547 0.99839 0.98346 1.58782 1.11803 1.15819 1.51874 1.43913 0.99787 1.68239 1.18415 1.18661 1.15228 0.91528 1.13999 0.93383 1.25539 1.00069 0.95318 0.95497 1.70186 1.33924 1.00757 1.46317 0.86676 0.84397 0.79146 0.79276 1.19756 1.21094 1.21553 0.96047 0.90185 0.93135 0.92752 0.93838 0.93176 0.94018 0.92535 0.93087 0.91695 0.94225 0.85826 0.85646 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 7.90 37.15 0.29 -2.98 16 2 C 0.19 4.56 3.09 -67.56 -0.21 4.36 16 3 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -2.67 5.36 -26.61 -0.14 -2.81 16 5 C -0.11 -2.06 5.88 -26.69 -0.16 -2.22 16 6 C -0.12 -2.29 5.17 -26.61 -0.14 -2.42 16 7 C 0.18 4.00 3.17 -67.60 -0.21 3.79 16 8 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 9 C 0.08 1.52 5.18 -3.82 -0.02 1.50 16 10 N -0.85 -13.90 9.10 -10.36 -0.09 -13.99 16 11 N -0.58 -14.39 2.76 -157.23 -0.43 -14.82 16 12 C -0.26 -7.03 6.47 -15.06 -0.10 -7.13 16 13 H 0.05 1.31 7.31 -52.49 -0.38 0.93 16 14 C 0.04 1.03 3.29 -17.43 -0.06 0.97 16 15 N -0.87 -24.71 11.95 55.49 0.66 -24.05 16 16 Si 0.88 20.95 29.60 -169.99 -5.03 15.91 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H 0.02 0.43 8.13 -51.93 -0.42 0.00 16 21 H 0.08 2.06 5.18 -51.93 -0.27 1.79 16 22 H 0.05 1.19 7.55 -51.93 -0.39 0.80 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.03 7.88 -51.93 -0.41 0.62 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.37 7.70 -51.93 -0.40 0.97 16 30 H 0.04 0.90 7.55 -51.92 -0.39 0.51 16 31 H 0.33 4.61 9.08 -39.29 -0.36 4.26 16 32 H 0.33 5.09 9.06 -39.30 -0.36 4.73 16 33 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 LS Contribution 254.99 15.07 3.84 3.84 Total: -1.00 -28.00 254.99 -7.27 -35.27 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.47 Total: 4.77 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.74 Total: -6.94 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.13 Total: -52.86 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.00 -7.27 -35.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069722666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.235 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds