Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.49564 * 2 1 4 4 C 1.53035 * 109.49817 * 239.93572 * 2 1 3 5 5 C 1.53042 * 109.53796 * 301.40989 * 4 2 1 6 6 C 1.53191 * 109.31290 * 298.63728 * 5 4 2 7 7 N 1.46928 * 108.77544 * 54.63485 * 6 5 4 8 8 C 1.36938 * 120.63015 * 126.36991 * 7 6 5 9 9 H 1.08002 * 119.99981 * 216.63074 * 8 7 6 10 10 C 1.38808 * 120.00259 * 36.62460 * 8 7 6 11 11 N 1.31620 * 120.00303 * 214.30175 * 10 8 7 12 12 Si 1.86807 * 119.99990 * 34.30217 * 10 8 7 13 13 H 1.48500 * 109.46635 * 84.83982 * 12 10 8 14 14 H 1.48497 * 109.47122 * 204.84348 * 12 10 8 15 15 H 1.48497 * 109.46932 * 324.84485 * 12 10 8 16 16 C 1.46928 * 118.73972 * 306.39069 * 7 6 5 17 17 H 1.09003 * 109.58129 * 293.82452 * 16 7 6 18 18 C 1.52996 * 109.58758 * 173.39728 * 16 7 6 19 19 N 1.46901 * 109.47021 * 174.42331 * 18 16 7 20 20 H 1.09001 * 109.46568 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46804 * 300.06456 * 1 2 3 22 22 H 1.08998 * 109.46624 * 60.06583 * 1 2 3 23 23 H 1.08997 * 109.46506 * 61.43322 * 4 2 1 24 24 H 1.09001 * 109.45825 * 181.39148 * 4 2 1 25 25 H 1.09005 * 109.49520 * 58.58739 * 5 4 2 26 26 H 1.09003 * 109.49855 * 178.68292 * 5 4 2 27 27 H 1.08989 * 109.58728 * 294.84425 * 6 5 4 28 28 H 1.09003 * 109.58236 * 174.41688 * 6 5 4 29 29 H 0.96999 * 119.99984 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.47313 * 294.42444 * 18 16 7 31 31 H 1.08999 * 109.47354 * 54.42414 * 18 16 7 32 32 H 1.00898 * 110.99865 * 177.60804 * 19 18 16 33 33 H 1.00902 * 110.99734 * 301.56428 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 1.5031 -2.1554 -1.2665 6 6 2.0141 -2.9040 -0.0315 7 7 1.6516 -2.1384 1.1690 8 6 0.9632 -2.7318 2.1934 9 1 0.2176 -2.1720 2.7384 10 6 1.2237 -4.0527 2.5312 11 7 0.2488 -4.8276 2.9572 12 14 2.9579 -4.7307 2.3811 13 1 3.7228 -4.4103 3.6129 14 1 2.8998 -6.2038 2.2035 15 1 3.6295 -4.1166 1.2076 16 6 2.0413 -0.7240 1.2495 17 1 3.1275 -0.6466 1.2979 18 6 1.4229 -0.0918 2.4979 19 7 1.9203 1.2822 2.6485 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5148 0.8894 22 1 -0.3632 0.5128 -0.8906 23 1 1.6989 -0.1953 -2.1389 24 1 3.1306 -0.7440 -1.2354 25 1 0.4133 -2.1351 -1.2546 26 1 1.8482 -2.6622 -2.1678 27 1 3.0980 -3.0042 -0.0875 28 1 1.5555 -3.8918 0.0127 29 1 0.4309 -5.7505 3.1936 30 1 0.3376 -0.0764 2.3978 31 1 1.6985 -0.6762 3.3757 32 1 1.4965 1.7350 3.4444 33 1 2.9268 1.2968 2.7177 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069726927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = 15.580397 kcal Electronic energy + Delta-G solvation = -13825.259196 eV Core-core repulsion = 11693.159506 eV Total energy + Delta-G solvation = -2132.099690 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.57924 -34.05554 -33.38425 -31.03660 -30.29691 -26.37512 -25.21495 -23.96633 -21.70915 -20.34691 -18.09399 -16.43793 -15.71205 -14.86413 -14.52378 -14.03754 -13.88692 -13.50731 -12.96189 -12.59945 -12.37514 -11.86104 -11.68016 -11.31174 -10.96181 -10.81206 -10.55404 -10.43806 -10.15836 -9.89854 -9.54674 -9.39016 -9.29165 -8.32854 -8.13369 -6.71582 -6.03863 -3.30015 3.41777 3.52341 3.57736 4.59453 4.81694 5.20059 5.47203 5.53601 5.57876 5.67045 5.91146 6.06266 6.15652 6.25772 6.37324 6.38387 6.49353 6.52837 6.60647 6.68686 6.81055 6.94508 6.97234 7.03203 7.07819 7.29257 7.58328 7.84069 8.06431 8.41693 9.03578 9.76975 10.25094 11.11648 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.015845 C = 0.013311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.563661 B = 1766.721800 C = 2103.068552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.107 4.107 5 C -0.140 4.140 6 C 0.145 3.855 7 N -0.594 5.594 8 C -0.271 4.271 9 H 0.077 0.923 10 C 0.045 3.955 11 N -0.885 5.885 12 Si 0.839 3.161 13 H -0.291 1.291 14 H -0.298 1.298 15 H -0.257 1.257 16 C 0.181 3.819 17 H 0.020 0.980 18 C 0.065 3.935 19 N -0.853 5.853 20 H 0.067 0.933 21 H 0.050 0.950 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.262 0.738 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.334 0.666 33 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 8.199 -4.732 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.083 0.917 4 C -0.145 4.145 5 C -0.179 4.179 6 C 0.020 3.980 7 N -0.319 5.319 8 C -0.398 4.398 9 H 0.094 0.906 10 C -0.157 4.157 11 N -0.524 5.524 12 Si 0.666 3.334 13 H -0.219 1.219 14 H -0.225 1.225 15 H -0.182 1.182 16 C 0.075 3.925 17 H 0.038 0.962 18 C -0.065 4.065 19 N -0.381 5.381 20 H 0.086 0.914 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.145 0.855 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.962 8.139 -5.372 10.192 hybrid contribution 1.423 -0.939 0.986 1.969 sum 4.385 7.200 -4.386 9.503 Atomic orbital electron populations 1.21782 0.95589 1.02357 0.99579 1.21373 0.96214 0.98313 0.95285 0.91653 1.21463 0.99415 0.96293 0.97340 1.22109 1.01431 0.95889 0.98483 1.21302 0.96540 0.94830 0.85367 1.44285 1.65983 1.05973 1.15646 1.18639 1.14003 0.95633 1.11565 0.90557 1.25472 0.96674 0.96331 0.97222 1.70074 1.30628 1.06120 1.45602 0.87494 0.89528 0.77272 0.79072 1.21891 1.22470 1.18160 1.20403 0.94820 0.85009 0.92303 0.96199 1.21968 1.00425 0.86424 0.97671 1.58770 1.11004 1.19712 1.48622 0.91379 0.93065 0.94897 0.93557 0.93244 0.91616 0.93522 0.95942 0.91774 0.92832 0.90389 0.94304 0.85520 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.21 37.16 0.30 -2.13 16 2 C -0.09 -1.63 2.64 -90.50 -0.24 -1.87 16 3 H 0.07 1.12 7.96 -51.93 -0.41 0.70 16 4 C -0.11 -1.82 5.43 -26.69 -0.14 -1.97 16 5 C -0.14 -2.59 5.74 -26.61 -0.15 -2.74 16 6 C 0.15 3.21 4.46 -3.71 -0.02 3.19 16 7 N -0.59 -13.91 1.99 -164.78 -0.33 -14.24 16 8 C -0.27 -7.30 8.49 -15.06 -0.13 -7.43 16 9 H 0.08 2.20 6.78 -52.49 -0.36 1.84 16 10 C 0.04 1.27 4.82 -17.43 -0.08 1.18 16 11 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 12 Si 0.84 21.38 27.10 -169.99 -4.61 16.77 16 13 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 14 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 15 H -0.26 -6.27 4.92 56.52 0.28 -5.99 16 16 C 0.18 3.65 2.82 -67.60 -0.19 3.46 16 17 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 18 C 0.07 1.23 4.67 -3.83 -0.02 1.21 16 19 N -0.85 -12.75 9.24 -10.37 -0.10 -12.85 16 20 H 0.07 1.38 5.97 -51.93 -0.31 1.07 16 21 H 0.05 0.92 6.23 -51.93 -0.32 0.59 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.26 6.34 -51.93 -0.33 0.93 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.51 6.58 -51.94 -0.34 0.16 16 28 H 0.06 1.53 6.59 -51.93 -0.34 1.19 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.08 1.56 5.59 -51.93 -0.29 1.27 16 31 H 0.04 0.82 7.36 -51.93 -0.38 0.43 16 32 H 0.33 4.32 9.08 -39.29 -0.36 3.96 16 33 H 0.33 4.57 9.02 -39.29 -0.35 4.21 16 LS Contribution 245.24 15.07 3.70 3.70 Total: -1.00 -28.88 245.24 -6.40 -35.29 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.17 Total: 4.18 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.67 Total: -7.10 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.35 Total: -52.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.61 Total: 16.77 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.88 -6.40 -35.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069726927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds