Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.49564 * 2 1 4 4 C 1.53035 * 109.49817 * 239.93572 * 2 1 3 5 5 C 1.53042 * 109.53796 * 301.40989 * 4 2 1 6 6 C 1.53191 * 109.31290 * 298.63728 * 5 4 2 7 7 N 1.46928 * 108.77544 * 54.63485 * 6 5 4 8 8 C 1.36938 * 120.63015 * 126.36991 * 7 6 5 9 9 H 1.08002 * 119.99981 * 216.63074 * 8 7 6 10 10 C 1.38808 * 120.00259 * 36.62460 * 8 7 6 11 11 N 1.31620 * 120.00303 * 214.30175 * 10 8 7 12 12 Si 1.86807 * 119.99990 * 34.30217 * 10 8 7 13 13 H 1.48500 * 109.46635 * 84.83982 * 12 10 8 14 14 H 1.48497 * 109.47122 * 204.84348 * 12 10 8 15 15 H 1.48497 * 109.46932 * 324.84485 * 12 10 8 16 16 C 1.46928 * 118.73972 * 306.39069 * 7 6 5 17 17 H 1.09003 * 109.58129 * 293.82452 * 16 7 6 18 18 C 1.52996 * 109.58758 * 173.39728 * 16 7 6 19 19 N 1.46901 * 109.47021 * 174.42331 * 18 16 7 20 20 H 1.09001 * 109.46568 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46804 * 300.06456 * 1 2 3 22 22 H 1.08998 * 109.46624 * 60.06583 * 1 2 3 23 23 H 1.08997 * 109.46506 * 61.43322 * 4 2 1 24 24 H 1.09001 * 109.45825 * 181.39148 * 4 2 1 25 25 H 1.09005 * 109.49520 * 58.58739 * 5 4 2 26 26 H 1.09003 * 109.49855 * 178.68292 * 5 4 2 27 27 H 1.08989 * 109.58728 * 294.84425 * 6 5 4 28 28 H 1.09003 * 109.58236 * 174.41688 * 6 5 4 29 29 H 0.96999 * 119.99984 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.47313 * 294.42444 * 18 16 7 31 31 H 1.08999 * 109.47354 * 54.42414 * 18 16 7 32 32 H 1.00898 * 110.99865 * 177.60804 * 19 18 16 33 33 H 1.00902 * 110.99734 * 301.56428 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 1.5031 -2.1554 -1.2665 6 6 2.0141 -2.9040 -0.0315 7 7 1.6516 -2.1384 1.1690 8 6 0.9632 -2.7318 2.1934 9 1 0.2176 -2.1720 2.7384 10 6 1.2237 -4.0527 2.5312 11 7 0.2488 -4.8276 2.9572 12 14 2.9579 -4.7307 2.3811 13 1 3.7228 -4.4103 3.6129 14 1 2.8998 -6.2038 2.2035 15 1 3.6295 -4.1166 1.2076 16 6 2.0413 -0.7240 1.2495 17 1 3.1275 -0.6466 1.2979 18 6 1.4229 -0.0918 2.4979 19 7 1.9203 1.2822 2.6485 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5148 0.8894 22 1 -0.3632 0.5128 -0.8906 23 1 1.6989 -0.1953 -2.1389 24 1 3.1306 -0.7440 -1.2354 25 1 0.4133 -2.1351 -1.2546 26 1 1.8482 -2.6622 -2.1678 27 1 3.0980 -3.0042 -0.0875 28 1 1.5555 -3.8918 0.0127 29 1 0.4309 -5.7505 3.1936 30 1 0.3376 -0.0764 2.3978 31 1 1.6985 -0.6762 3.3757 32 1 1.4965 1.7350 3.4444 33 1 2.9268 1.2968 2.7177 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069726927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -4.704982 kcal Electronic energy + Delta-G solvation = -13826.138836 eV Core-core repulsion = 11693.159506 eV Total energy + Delta-G solvation = -2132.979330 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18514 -35.54320 -35.22871 -32.98873 -31.79828 -27.94627 -26.98703 -25.55848 -23.51035 -21.91376 -19.77138 -18.25841 -17.41045 -16.59455 -16.09478 -15.66984 -15.50016 -15.15150 -14.51638 -14.44438 -14.07804 -13.62894 -13.24248 -12.86857 -12.76170 -12.48518 -12.35581 -12.12458 -11.90107 -11.44791 -11.34956 -10.95414 -10.88340 -10.45016 -9.49729 -8.65571 -8.21692 -5.43220 1.35942 1.43476 1.51479 2.48254 2.96019 3.34749 4.02772 4.04250 4.12638 4.15947 4.38679 4.54056 4.62670 4.72436 4.84121 4.87570 4.99861 5.09467 5.13883 5.19013 5.24119 5.38123 5.45873 5.50777 5.59081 5.79984 5.96709 6.17474 6.32951 6.69109 7.04112 7.71662 8.19825 8.97958 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.015845 C = 0.013311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.563661 B = 1766.721800 C = 2103.068552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.104 4.104 5 C -0.133 4.133 6 C 0.139 3.861 7 N -0.604 5.604 8 C -0.249 4.249 9 H 0.048 0.952 10 C -0.008 4.008 11 N -0.933 5.933 12 Si 0.896 3.104 13 H -0.298 1.298 14 H -0.304 1.304 15 H -0.238 1.238 16 C 0.174 3.826 17 H 0.024 0.976 18 C 0.078 3.922 19 N -0.839 5.839 20 H 0.037 0.963 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.062 0.938 31 H 0.009 0.991 32 H 0.348 0.652 33 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 9.977 -6.445 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.141 4.141 5 C -0.172 4.172 6 C 0.014 3.986 7 N -0.329 5.329 8 C -0.378 4.378 9 H 0.065 0.935 10 C -0.206 4.206 11 N -0.576 5.576 12 Si 0.724 3.276 13 H -0.226 1.226 14 H -0.231 1.231 15 H -0.162 1.162 16 C 0.069 3.931 17 H 0.042 0.958 18 C -0.053 4.053 19 N -0.369 5.369 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.160 0.840 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.460 9.960 -7.108 13.023 hybrid contribution 0.921 -1.387 1.518 2.253 sum 5.381 8.572 -5.590 11.562 Atomic orbital electron populations 1.21695 0.95840 1.00591 1.00506 1.21325 0.95856 0.98931 0.94406 0.89840 1.21465 0.99920 0.94964 0.97797 1.22004 1.00722 0.96985 0.97450 1.21341 0.96504 0.94205 0.86521 1.44412 1.65851 1.07383 1.15268 1.18549 1.12769 0.95154 1.11366 0.93470 1.25951 0.99309 0.97016 0.98348 1.70161 1.32252 1.06469 1.48758 0.86567 0.85459 0.76309 0.79243 1.22607 1.23097 1.16173 1.20621 0.95058 0.83246 0.94188 0.95834 1.21669 0.99468 0.88048 0.96101 1.58679 1.11899 1.16867 1.49494 0.94429 0.93646 0.92485 0.90760 0.92316 0.92738 0.90910 0.95561 0.94358 0.93084 0.91989 0.97321 0.83960 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.21 71.98 0.59 -3.76 16 2 C -0.09 -2.77 2.64 -10.72 -0.03 -2.80 16 3 H 0.08 2.47 7.96 -2.39 -0.02 2.46 16 4 C -0.10 -3.08 5.43 30.62 0.17 -2.92 16 5 C -0.13 -4.54 5.74 30.67 0.18 -4.36 16 6 C 0.14 5.96 4.46 86.36 0.39 6.34 16 7 N -0.60 -27.94 1.99 -675.24 -1.35 -29.28 16 8 C -0.25 -13.72 8.49 84.03 0.71 -13.01 16 9 H 0.05 2.84 6.78 -2.91 -0.02 2.83 16 10 C -0.01 -0.49 4.82 84.86 0.41 -0.08 16 11 N -0.93 -57.86 13.97 21.65 0.30 -57.56 16 12 Si 0.90 44.87 27.10 68.60 1.86 46.73 16 13 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 14 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 15 H -0.24 -11.01 4.92 99.48 0.49 -10.52 16 16 C 0.17 6.72 2.82 44.97 0.13 6.84 16 17 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 18 C 0.08 2.90 4.67 86.30 0.40 3.30 16 19 N -0.84 -23.20 9.24 -186.72 -1.72 -24.92 16 20 H 0.04 1.49 5.97 -2.39 -0.01 1.47 16 21 H 0.04 1.56 6.23 -2.39 -0.01 1.54 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.99 6.34 -2.38 -0.02 1.98 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.03 1.11 6.58 -2.39 -0.02 1.10 16 28 H 0.04 1.81 6.59 -2.39 -0.02 1.80 16 29 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.06 2.50 5.59 -2.39 -0.01 2.49 16 31 H 0.01 0.37 7.36 -2.39 -0.02 0.35 16 32 H 0.35 8.26 9.08 -89.70 -0.81 7.44 16 33 H 0.34 8.48 9.02 -89.69 -0.81 7.67 16 Total: -1.00 -62.54 245.24 1.30 -61.24 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.73 Total: 14.24 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 2.94 Total: -10.44 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -2.77 Total: -111.77 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.86 Total: 46.73 kcal Total: -62.54 1.30 -61.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069726927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.532 kcal (2) G-P(sol) polarization free energy of solvation -62.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds