Wall clock time and date at job start Mon Mar 30 2020 02:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.70324 * 2 1 4 4 C 1.53624 * 109.66088 * 120.59756 * 2 1 3 5 5 C 1.53043 * 109.24039 * 174.54674 * 4 2 1 6 6 C 1.53038 * 109.53674 * 298.51022 * 5 4 2 7 7 H 1.09001 * 109.52230 * 301.39538 * 6 5 4 8 8 C 1.53002 * 109.49649 * 181.31581 * 6 5 4 9 9 N 1.46904 * 109.46830 * 175.15854 * 8 6 5 10 10 C 1.53190 * 109.31679 * 61.36552 * 6 5 4 11 11 N 1.46924 * 108.77244 * 305.36682 * 10 6 5 12 12 C 1.36938 * 120.62974 * 233.58410 * 11 10 6 13 13 H 1.08003 * 120.00277 * 150.45935 * 12 11 10 14 14 C 1.38813 * 120.00182 * 330.18445 * 12 11 10 15 15 N 1.31617 * 119.99426 * 344.27642 * 14 12 11 16 16 Si 1.86797 * 120.00269 * 164.27711 * 14 12 11 17 17 H 1.48490 * 109.47322 * 94.03595 * 16 14 12 18 18 H 1.48501 * 109.47079 * 214.04148 * 16 14 12 19 19 H 1.48502 * 109.46903 * 334.03327 * 16 14 12 20 20 H 1.08991 * 109.47240 * 180.35382 * 1 2 3 21 21 H 1.09003 * 109.46795 * 300.35503 * 1 2 3 22 22 H 1.09001 * 109.47003 * 60.35108 * 1 2 3 23 23 H 1.08991 * 109.64024 * 54.55700 * 4 2 1 24 24 H 1.09002 * 109.45738 * 294.42796 * 4 2 1 25 25 H 1.08997 * 109.46411 * 178.48690 * 5 4 2 26 26 H 1.09001 * 109.45895 * 58.52832 * 5 4 2 27 27 H 1.08992 * 109.47318 * 295.15735 * 8 6 5 28 28 H 1.08998 * 109.47544 * 55.16350 * 8 6 5 29 29 H 1.00904 * 110.99916 * 56.05168 * 9 8 6 30 30 H 1.00909 * 110.99678 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.59307 * 185.57841 * 10 6 5 32 32 H 1.09002 * 109.58686 * 65.14818 * 10 6 5 33 33 H 0.97003 * 119.99894 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0469 -0.7364 1.2453 5 6 3.5711 -0.8500 1.1676 6 6 3.9614 -1.6629 -0.0689 7 1 3.5064 -2.6518 -0.0132 8 6 5.4838 -1.8037 -0.1278 9 7 5.8514 -2.6800 -1.2481 10 6 3.4656 -0.9421 -1.3264 11 7 2.0226 -0.6996 -1.1945 12 6 1.1537 -1.1126 -2.1690 13 1 0.1395 -1.3792 -1.9106 14 6 1.5748 -1.1832 -3.4898 15 7 2.6810 -0.5744 -3.8612 16 14 0.5715 -2.1422 -4.7400 17 1 -0.3622 -1.2214 -5.4367 18 1 1.4831 -2.7669 -5.7320 19 1 -0.2040 -3.2010 -4.0451 20 1 -0.3633 -1.0275 0.0063 21 1 -0.3633 0.5194 0.8868 22 1 -0.3633 0.5084 -0.8931 23 1 1.6096 -1.7337 1.2889 24 1 1.7688 -0.1777 2.1390 25 1 3.9443 -1.3482 2.0623 26 1 4.0065 0.1470 1.0990 27 1 5.9342 -0.8218 -0.2717 28 1 5.8451 -2.2361 0.8052 29 1 5.4724 -2.3343 -2.1170 30 1 6.8528 -2.7887 -1.3086 31 1 3.6531 -1.5637 -2.2019 32 1 3.9877 0.0089 -1.4323 33 1 2.9755 -0.6240 -4.7841 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069728838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:09 Heat of formation + Delta-G solvation = 3.980788 kcal Electronic energy + Delta-G solvation = -13577.913986 eV Core-core repulsion = 11445.311299 eV Total energy + Delta-G solvation = -2132.602687 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.06298 -34.72430 -32.84613 -31.02790 -29.74586 -26.58079 -25.24092 -23.00673 -21.84230 -19.78368 -18.93522 -16.43360 -15.28381 -15.06110 -14.33330 -13.84158 -13.66997 -13.19261 -13.00465 -12.63303 -12.15778 -12.07743 -11.26658 -11.01868 -10.83837 -10.75357 -10.46404 -10.33217 -10.12865 -9.90855 -9.88668 -9.38552 -9.13788 -8.40737 -8.20519 -6.54698 -5.72606 -3.15329 3.40808 3.48157 3.50942 4.54486 5.06438 5.35256 5.41466 5.64939 5.67581 5.74878 5.85877 6.04004 6.16701 6.24773 6.35052 6.45231 6.52652 6.55833 6.63436 6.77424 6.82292 7.00291 7.12770 7.21421 7.47549 7.60783 7.73659 7.87887 7.92198 8.53435 9.28812 9.92956 10.51023 11.35936 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028456 B = 0.015572 C = 0.010915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.728003 B = 1797.644149 C = 2564.752815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.128 4.128 5 C -0.103 4.103 6 C -0.114 4.114 7 H 0.070 0.930 8 C 0.073 3.927 9 N -0.853 5.853 10 C 0.180 3.820 11 N -0.587 5.587 12 C -0.246 4.246 13 H 0.068 0.932 14 C 0.002 3.998 15 N -0.905 5.905 16 Si 0.899 3.101 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.279 1.279 20 H 0.052 0.948 21 H 0.037 0.963 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.350 0.650 30 H 0.329 0.671 31 H 0.088 0.912 32 H 0.010 0.990 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 -0.557 7.106 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.040 0.960 4 C -0.167 4.167 5 C -0.141 4.141 6 C -0.135 4.135 7 H 0.089 0.911 8 C -0.058 4.058 9 N -0.383 5.383 10 C 0.054 3.946 11 N -0.310 5.310 12 C -0.376 4.376 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.550 5.550 16 Si 0.729 3.271 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.205 1.205 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.165 0.835 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.028 0.972 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.232 -1.105 7.316 7.728 hybrid contribution 0.128 0.421 -1.083 1.169 sum 2.360 -0.683 6.233 6.700 Atomic orbital electron populations 1.21802 0.96246 1.01250 1.00079 1.20544 0.92769 0.93413 0.87338 0.96022 1.22109 0.95517 1.00816 0.98305 1.21400 0.96344 0.99382 0.97018 1.21878 0.93146 1.00346 0.98129 0.91140 1.21749 0.96735 0.93570 0.93758 1.58782 1.15919 1.55037 1.08528 1.20763 0.83456 0.96272 0.94093 1.44098 1.02847 1.65039 1.19035 1.19187 0.95162 1.37182 0.86091 0.91411 1.25068 0.98020 0.99636 0.96911 1.70029 1.24583 1.43947 1.16476 0.86327 0.79397 0.79971 0.81368 1.21629 1.21617 1.20459 0.92876 0.94436 0.92131 0.92395 0.93442 0.93789 0.93091 0.96281 0.92461 0.83504 0.86030 0.89394 0.97167 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 7.96 37.16 0.30 -2.38 16 2 C 0.17 3.58 3.51 -67.37 -0.24 3.34 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.36 5.40 -26.38 -0.14 -2.50 16 5 C -0.10 -1.84 5.16 -26.69 -0.14 -1.97 16 6 C -0.11 -2.27 2.55 -90.50 -0.23 -2.50 16 7 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 8 C 0.07 1.25 6.25 -3.82 -0.02 1.23 16 9 N -0.85 -14.35 9.62 -10.37 -0.10 -14.45 16 10 C 0.18 4.32 4.20 -3.71 -0.02 4.31 16 11 N -0.59 -14.86 2.98 -164.52 -0.49 -15.35 16 12 C -0.25 -6.76 8.57 -15.06 -0.13 -6.89 16 13 H 0.07 1.82 6.24 -52.48 -0.33 1.50 16 14 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 15 N -0.91 -26.17 11.25 55.49 0.62 -25.55 16 16 Si 0.90 21.92 29.58 -169.99 -5.03 16.90 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.05 1.05 7.44 -51.93 -0.39 0.66 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.35 6.47 7.38 -39.29 -0.29 6.18 16 30 H 0.33 4.54 9.08 -39.29 -0.36 4.18 16 31 H 0.09 2.32 4.96 -51.93 -0.26 2.06 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 255.73 15.07 3.85 3.85 Total: -1.00 -28.96 255.73 -7.22 -36.19 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.38 Total: 5.81 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.71 Total: -7.40 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.03 Total: -55.35 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.96 -7.22 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069728838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.168 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds