Wall clock time and date at job start Mon Mar 30 2020 02:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.70324 * 2 1 4 4 C 1.53624 * 109.66088 * 120.59756 * 2 1 3 5 5 C 1.53043 * 109.24039 * 174.54674 * 4 2 1 6 6 C 1.53038 * 109.53674 * 298.51022 * 5 4 2 7 7 H 1.09001 * 109.52230 * 301.39538 * 6 5 4 8 8 C 1.53002 * 109.49649 * 181.31581 * 6 5 4 9 9 N 1.46904 * 109.46830 * 175.15854 * 8 6 5 10 10 C 1.53190 * 109.31679 * 61.36552 * 6 5 4 11 11 N 1.46924 * 108.77244 * 305.36682 * 10 6 5 12 12 C 1.36938 * 120.62974 * 233.58410 * 11 10 6 13 13 H 1.08003 * 120.00277 * 150.45935 * 12 11 10 14 14 C 1.38813 * 120.00182 * 330.18445 * 12 11 10 15 15 N 1.31617 * 119.99426 * 344.27642 * 14 12 11 16 16 Si 1.86797 * 120.00269 * 164.27711 * 14 12 11 17 17 H 1.48490 * 109.47322 * 94.03595 * 16 14 12 18 18 H 1.48501 * 109.47079 * 214.04148 * 16 14 12 19 19 H 1.48502 * 109.46903 * 334.03327 * 16 14 12 20 20 H 1.08991 * 109.47240 * 180.35382 * 1 2 3 21 21 H 1.09003 * 109.46795 * 300.35503 * 1 2 3 22 22 H 1.09001 * 109.47003 * 60.35108 * 1 2 3 23 23 H 1.08991 * 109.64024 * 54.55700 * 4 2 1 24 24 H 1.09002 * 109.45738 * 294.42796 * 4 2 1 25 25 H 1.08997 * 109.46411 * 178.48690 * 5 4 2 26 26 H 1.09001 * 109.45895 * 58.52832 * 5 4 2 27 27 H 1.08992 * 109.47318 * 295.15735 * 8 6 5 28 28 H 1.08998 * 109.47544 * 55.16350 * 8 6 5 29 29 H 1.00904 * 110.99916 * 56.05168 * 9 8 6 30 30 H 1.00909 * 110.99678 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.59307 * 185.57841 * 10 6 5 32 32 H 1.09002 * 109.58686 * 65.14818 * 10 6 5 33 33 H 0.97003 * 119.99894 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0469 -0.7364 1.2453 5 6 3.5711 -0.8500 1.1676 6 6 3.9614 -1.6629 -0.0689 7 1 3.5064 -2.6518 -0.0132 8 6 5.4838 -1.8037 -0.1278 9 7 5.8514 -2.6800 -1.2481 10 6 3.4656 -0.9421 -1.3264 11 7 2.0226 -0.6996 -1.1945 12 6 1.1537 -1.1126 -2.1690 13 1 0.1395 -1.3792 -1.9106 14 6 1.5748 -1.1832 -3.4898 15 7 2.6810 -0.5744 -3.8612 16 14 0.5715 -2.1422 -4.7400 17 1 -0.3622 -1.2214 -5.4367 18 1 1.4831 -2.7669 -5.7320 19 1 -0.2040 -3.2010 -4.0451 20 1 -0.3633 -1.0275 0.0063 21 1 -0.3633 0.5194 0.8868 22 1 -0.3633 0.5084 -0.8931 23 1 1.6096 -1.7337 1.2889 24 1 1.7688 -0.1777 2.1390 25 1 3.9443 -1.3482 2.0623 26 1 4.0065 0.1470 1.0990 27 1 5.9342 -0.8218 -0.2717 28 1 5.8451 -2.2361 0.8052 29 1 5.4724 -2.3343 -2.1170 30 1 6.8528 -2.7887 -1.3086 31 1 3.6531 -1.5637 -2.2019 32 1 3.9877 0.0089 -1.4323 33 1 2.9755 -0.6240 -4.7841 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069728838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:09 Heat of formation + Delta-G solvation = -15.734910 kcal Electronic energy + Delta-G solvation = -13578.768923 eV Core-core repulsion = 11445.311299 eV Total energy + Delta-G solvation = -2133.457624 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.73913 -36.29356 -34.71256 -32.59237 -31.63840 -28.14036 -27.18997 -24.68411 -23.46530 -21.45013 -20.62556 -18.34316 -17.11299 -16.58868 -15.99963 -15.55743 -15.31427 -14.87679 -14.69033 -14.16364 -13.87932 -13.64762 -12.98318 -12.71834 -12.67412 -12.47762 -12.29443 -12.05384 -11.89843 -11.60168 -11.53772 -11.06977 -10.86789 -10.48992 -9.55753 -8.57148 -7.81733 -5.27282 1.45825 1.48151 1.57269 2.53673 3.32201 3.64252 3.72116 4.12774 4.14759 4.26837 4.32668 4.53656 4.66551 4.72663 4.86474 4.90212 4.95122 5.04278 5.09537 5.15221 5.26277 5.44260 5.52020 5.55591 5.65431 5.75538 5.83382 6.24654 6.47026 6.64416 7.21565 7.94105 8.46432 9.24341 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028456 B = 0.015572 C = 0.010915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.728003 B = 1797.644149 C = 2564.752815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.105 4.105 7 H 0.051 0.949 8 C 0.078 3.922 9 N -0.859 5.859 10 C 0.189 3.811 11 N -0.607 5.607 12 C -0.252 4.252 13 H 0.070 0.930 14 C -0.051 4.051 15 N -0.935 5.935 16 Si 0.960 3.040 17 H -0.288 1.288 18 H -0.293 1.293 19 H -0.272 1.272 20 H 0.047 0.953 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.083 0.917 29 H 0.338 0.662 30 H 0.347 0.653 31 H 0.058 0.942 32 H -0.017 1.017 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -1.022 8.900 9.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.159 4.159 5 C -0.139 4.139 6 C -0.125 4.125 7 H 0.070 0.930 8 C -0.053 4.053 9 N -0.389 5.389 10 C 0.063 3.937 11 N -0.330 5.330 12 C -0.383 4.383 13 H 0.087 0.913 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.788 3.212 17 H -0.215 1.215 18 H -0.220 1.220 19 H -0.197 1.197 20 H 0.066 0.934 21 H 0.093 0.907 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.102 0.898 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.001 0.999 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.129 -1.573 9.147 9.523 hybrid contribution 0.157 0.609 -1.606 1.725 sum 2.286 -0.964 7.542 7.939 Atomic orbital electron populations 1.21721 0.94895 1.01137 1.00812 1.20833 0.94097 0.92934 0.87409 0.97155 1.22007 0.95786 1.00424 0.97641 1.21404 0.96042 0.99393 0.97028 1.21698 0.94916 0.98882 0.97001 0.92998 1.21721 0.94682 0.94065 0.94872 1.58782 1.17400 1.54838 1.07890 1.20556 0.83073 0.94730 0.95317 1.44426 1.03107 1.65697 1.19804 1.19489 0.95570 1.36401 0.86814 0.91271 1.25771 0.99275 1.00919 0.98654 1.70175 1.26112 1.45456 1.16424 0.85375 0.77963 0.78737 0.79079 1.21457 1.21965 1.19692 0.93360 0.90669 0.94388 0.92922 0.90052 0.90477 0.92922 0.96074 0.89832 0.84875 0.84042 0.92374 0.99869 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 7.96 71.98 0.57 -4.27 16 2 C 0.15 6.43 3.51 45.12 0.16 6.59 16 3 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 4 C -0.12 -4.06 5.40 30.82 0.17 -3.89 16 5 C -0.10 -3.29 5.16 30.62 0.16 -3.13 16 6 C -0.10 -4.03 2.55 -10.72 -0.03 -4.06 16 7 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 8 C 0.08 2.52 6.25 86.30 0.54 3.05 16 9 N -0.86 -28.18 9.62 -186.72 -1.80 -29.97 16 10 C 0.19 9.24 4.20 86.36 0.36 9.60 16 11 N -0.61 -30.99 2.98 -674.43 -2.01 -33.00 16 12 C -0.25 -14.01 8.57 84.03 0.72 -13.29 16 13 H 0.07 3.74 6.24 -2.91 -0.02 3.72 16 14 C -0.05 -2.90 4.93 84.86 0.42 -2.48 16 15 N -0.93 -55.64 11.25 21.65 0.24 -55.40 16 16 Si 0.96 45.78 29.58 68.60 2.03 47.81 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H 0.05 1.84 7.44 -2.39 -0.02 1.83 16 21 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.04 1.57 7.63 -2.39 -0.02 1.55 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.34 12.71 7.38 -89.69 -0.66 12.05 16 30 H 0.35 9.08 9.08 -89.69 -0.81 8.27 16 31 H 0.06 3.18 4.96 -2.39 -0.01 3.16 16 32 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -62.76 255.73 1.15 -61.61 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.39 Total: 20.83 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 3.07 Total: -11.87 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -3.56 Total: -118.37 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -62.76 1.15 -61.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069728838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.877 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds