Wall clock time and date at job start Mon Mar 30 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.70669 * 2 1 4 4 C 1.52759 * 109.43399 * 120.16267 * 2 1 3 5 5 C 1.53043 * 109.38379 * 65.42328 * 4 2 1 6 6 C 1.53041 * 109.53641 * 61.23820 * 5 4 2 7 7 H 1.09004 * 109.49791 * 58.59179 * 6 5 4 8 8 C 1.53005 * 109.52451 * 178.67005 * 6 5 4 9 9 N 1.46901 * 109.47414 * 184.85805 * 8 6 5 10 10 C 1.53185 * 109.31552 * 298.63688 * 6 5 4 11 11 N 1.46923 * 108.77652 * 54.63248 * 10 6 5 12 12 C 1.36943 * 120.63060 * 126.36550 * 11 10 6 13 13 H 1.08001 * 120.00064 * 333.96894 * 12 11 10 14 14 C 1.38806 * 120.00005 * 153.96059 * 12 11 10 15 15 N 1.31624 * 120.00195 * 341.05595 * 14 12 11 16 16 Si 1.86805 * 119.99968 * 161.32799 * 14 12 11 17 17 H 1.48503 * 109.46859 * 60.00091 * 16 14 12 18 18 H 1.48497 * 109.46960 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46977 * 300.00100 * 16 14 12 20 20 H 1.09001 * 109.46921 * 180.35855 * 1 2 3 21 21 H 1.09004 * 109.46909 * 300.35549 * 1 2 3 22 22 H 1.08993 * 109.47443 * 60.35541 * 1 2 3 23 23 H 1.08997 * 109.56941 * 305.38892 * 4 2 1 24 24 H 1.09004 * 109.38971 * 185.34890 * 4 2 1 25 25 H 1.09004 * 109.46036 * 301.22374 * 5 4 2 26 26 H 1.09000 * 109.45254 * 181.25021 * 5 4 2 27 27 H 1.09004 * 109.46837 * 304.85809 * 8 6 5 28 28 H 1.08997 * 109.46922 * 64.85277 * 8 6 5 29 29 H 1.00900 * 110.99893 * 56.04343 * 9 8 6 30 30 H 1.00897 * 110.99812 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.58918 * 294.84453 * 10 6 5 32 32 H 1.09000 * 109.59082 * 174.42599 * 10 6 5 33 33 H 0.96997 * 120.00067 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0382 -0.7238 1.2455 5 6 1.6410 -2.2000 1.1727 6 6 2.2843 -2.8430 -0.0581 7 1 3.3678 -2.7405 0.0023 8 6 1.9140 -4.3266 -0.1124 9 7 2.6246 -4.9682 -1.2266 10 6 1.7740 -2.1421 -1.3210 11 7 2.0224 -0.6996 -1.1945 12 6 2.7051 -0.0211 -2.1686 13 1 3.4108 -0.5438 -2.7972 14 6 2.4901 1.3384 -2.3480 15 7 1.4007 1.9012 -1.8695 16 14 3.7431 2.3678 -3.2753 17 1 3.8905 1.8425 -4.6565 18 1 3.2827 3.7786 -3.3282 19 1 5.0524 2.3007 -2.5778 20 1 -0.3633 -1.0277 0.0064 21 1 -0.3633 0.5194 0.8868 22 1 -0.3634 0.5083 -0.8931 23 1 1.5988 -0.2723 2.1350 24 1 3.1240 -0.6413 1.2942 25 1 0.5564 -2.2810 1.0996 26 1 1.9838 -2.7129 2.0713 27 1 2.1981 -4.8065 0.8242 28 1 0.8389 -4.4275 -0.2608 29 1 3.6211 -4.8326 -1.1458 30 1 2.3962 -5.9493 -1.2839 31 1 0.7043 -2.3204 -1.4310 32 1 2.3023 -2.5289 -2.1924 33 1 1.2506 2.8513 -1.9946 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069728845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:14 Heat of formation + Delta-G solvation = 7.247409 kcal Electronic energy + Delta-G solvation = -13581.950414 eV Core-core repulsion = 11449.489378 eV Total energy + Delta-G solvation = -2132.461035 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.17738 -34.79583 -32.61424 -30.53525 -30.07062 -26.76265 -24.75579 -23.19080 -21.89528 -20.33506 -18.38545 -16.30349 -15.47776 -14.75169 -14.48733 -14.07324 -13.74367 -13.43526 -12.50950 -12.33161 -11.98738 -11.82183 -11.62018 -11.09706 -10.79720 -10.73929 -10.46865 -10.30656 -9.98257 -9.81469 -9.68302 -9.26459 -9.08274 -8.41135 -8.28407 -6.53299 -5.66810 -3.05800 3.45479 3.50764 3.52577 4.59341 4.81960 5.29767 5.46062 5.54926 5.67586 5.73727 5.90003 5.99839 6.21355 6.38402 6.49185 6.51427 6.70338 6.75221 6.82889 6.89657 7.04574 7.10231 7.18554 7.29728 7.38943 7.64725 7.77376 7.85338 7.98824 8.58251 9.35884 9.99920 10.56137 11.40835 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039407 B = 0.012277 C = 0.010338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.367240 B = 2280.049918 C = 2707.878702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.187 3.813 3 H 0.094 0.906 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.102 4.102 7 H 0.061 0.939 8 C 0.070 3.930 9 N -0.847 5.847 10 C 0.163 3.837 11 N -0.589 5.589 12 C -0.246 4.246 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.900 5.900 16 Si 0.898 3.102 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.286 1.286 20 H 0.024 0.976 21 H 0.024 0.976 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.338 0.662 30 H 0.333 0.667 31 H 0.013 0.987 32 H 0.060 0.940 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 -8.638 5.271 10.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.081 3.919 3 H 0.111 0.889 4 C -0.174 4.174 5 C -0.142 4.142 6 C -0.123 4.123 7 H 0.080 0.920 8 C -0.061 4.061 9 N -0.375 5.375 10 C 0.037 3.963 11 N -0.310 5.310 12 C -0.376 4.376 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.545 5.545 16 Si 0.728 3.272 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.213 1.213 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.348 -7.944 4.759 9.267 hybrid contribution 1.031 -0.028 0.362 1.093 sum 1.379 -7.972 5.121 9.575 Atomic orbital electron populations 1.22094 0.98945 0.98363 1.00875 1.20229 0.91707 0.96907 0.83104 0.88862 1.22055 1.00317 0.95226 0.99772 1.21442 1.00141 0.96584 0.96080 1.21672 1.00123 0.92377 0.98139 0.92015 1.21844 0.98681 0.95161 0.90460 1.58639 1.12809 1.18071 1.48029 1.20765 0.96572 0.84745 0.94207 1.44166 1.64940 1.02735 1.19191 1.19168 1.15318 0.91583 1.11504 0.91769 1.24932 0.96682 0.98338 0.99883 1.70034 1.23669 1.10917 1.49844 0.86429 0.81504 0.79479 0.79743 1.21052 1.21801 1.21303 0.95701 0.95698 0.90793 0.93487 0.93106 0.92424 0.94261 0.96638 0.91479 0.84927 0.85563 0.96875 0.92192 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.81 37.15 0.33 -2.97 16 2 C 0.19 4.51 2.32 -67.83 -0.16 4.35 16 3 H 0.09 2.56 5.98 -51.93 -0.31 2.25 16 4 C -0.13 -2.70 5.53 -26.83 -0.15 -2.85 16 5 C -0.10 -1.85 4.96 -26.69 -0.13 -1.98 16 6 C -0.10 -1.86 2.48 -90.50 -0.22 -2.08 16 7 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 8 C 0.07 1.03 6.18 -3.82 -0.02 1.00 16 9 N -0.85 -11.50 9.19 -10.37 -0.10 -11.60 16 10 C 0.16 3.61 5.21 -3.72 -0.02 3.59 16 11 N -0.59 -15.05 2.71 -165.04 -0.45 -15.50 16 12 C -0.25 -6.91 9.59 -15.06 -0.14 -7.05 16 13 H 0.06 1.79 7.89 -52.49 -0.41 1.38 16 14 C 0.00 -0.01 4.88 -17.43 -0.09 -0.10 16 15 N -0.90 -26.02 10.05 55.49 0.56 -25.46 16 16 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H 0.02 0.52 5.74 -51.93 -0.30 0.23 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.07 1.93 7.13 -51.93 -0.37 1.56 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 1.02 6.49 -51.93 -0.34 0.69 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.34 4.32 8.99 -39.29 -0.35 3.97 16 30 H 0.33 3.63 9.08 -39.29 -0.36 3.28 16 31 H 0.01 0.31 7.52 -51.93 -0.39 -0.08 16 32 H 0.06 1.37 7.70 -51.93 -0.40 0.97 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 254.65 15.07 3.84 3.84 Total: -1.00 -29.17 254.65 -7.11 -36.28 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.32 Total: 3.45 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.61 Total: -8.08 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.02 Total: -52.56 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.17 -7.11 -36.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069728845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.529 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds