Wall clock time and date at job start Mon Mar 30 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.70669 * 2 1 4 4 C 1.52759 * 109.43399 * 120.16267 * 2 1 3 5 5 C 1.53043 * 109.38379 * 65.42328 * 4 2 1 6 6 C 1.53041 * 109.53641 * 61.23820 * 5 4 2 7 7 H 1.09004 * 109.49791 * 58.59179 * 6 5 4 8 8 C 1.53005 * 109.52451 * 178.67005 * 6 5 4 9 9 N 1.46901 * 109.47414 * 184.85805 * 8 6 5 10 10 C 1.53185 * 109.31552 * 298.63688 * 6 5 4 11 11 N 1.46923 * 108.77652 * 54.63248 * 10 6 5 12 12 C 1.36943 * 120.63060 * 126.36550 * 11 10 6 13 13 H 1.08001 * 120.00064 * 333.96894 * 12 11 10 14 14 C 1.38806 * 120.00005 * 153.96059 * 12 11 10 15 15 N 1.31624 * 120.00195 * 341.05595 * 14 12 11 16 16 Si 1.86805 * 119.99968 * 161.32799 * 14 12 11 17 17 H 1.48503 * 109.46859 * 60.00091 * 16 14 12 18 18 H 1.48497 * 109.46960 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46977 * 300.00100 * 16 14 12 20 20 H 1.09001 * 109.46921 * 180.35855 * 1 2 3 21 21 H 1.09004 * 109.46909 * 300.35549 * 1 2 3 22 22 H 1.08993 * 109.47443 * 60.35541 * 1 2 3 23 23 H 1.08997 * 109.56941 * 305.38892 * 4 2 1 24 24 H 1.09004 * 109.38971 * 185.34890 * 4 2 1 25 25 H 1.09004 * 109.46036 * 301.22374 * 5 4 2 26 26 H 1.09000 * 109.45254 * 181.25021 * 5 4 2 27 27 H 1.09004 * 109.46837 * 304.85809 * 8 6 5 28 28 H 1.08997 * 109.46922 * 64.85277 * 8 6 5 29 29 H 1.00900 * 110.99893 * 56.04343 * 9 8 6 30 30 H 1.00897 * 110.99812 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.58918 * 294.84453 * 10 6 5 32 32 H 1.09000 * 109.59082 * 174.42599 * 10 6 5 33 33 H 0.96997 * 120.00067 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0382 -0.7238 1.2455 5 6 1.6410 -2.2000 1.1727 6 6 2.2843 -2.8430 -0.0581 7 1 3.3678 -2.7405 0.0023 8 6 1.9140 -4.3266 -0.1124 9 7 2.6246 -4.9682 -1.2266 10 6 1.7740 -2.1421 -1.3210 11 7 2.0224 -0.6996 -1.1945 12 6 2.7051 -0.0211 -2.1686 13 1 3.4108 -0.5438 -2.7972 14 6 2.4901 1.3384 -2.3480 15 7 1.4007 1.9012 -1.8695 16 14 3.7431 2.3678 -3.2753 17 1 3.8905 1.8425 -4.6565 18 1 3.2827 3.7786 -3.3282 19 1 5.0524 2.3007 -2.5778 20 1 -0.3633 -1.0277 0.0064 21 1 -0.3633 0.5194 0.8868 22 1 -0.3634 0.5083 -0.8931 23 1 1.5988 -0.2723 2.1350 24 1 3.1240 -0.6413 1.2942 25 1 0.5564 -2.2810 1.0996 26 1 1.9838 -2.7129 2.0713 27 1 2.1981 -4.8065 0.8242 28 1 0.8389 -4.4275 -0.2608 29 1 3.6211 -4.8326 -1.1458 30 1 2.3962 -5.9493 -1.2839 31 1 0.7043 -2.3204 -1.4310 32 1 2.3023 -2.5289 -2.1924 33 1 1.2506 2.8513 -1.9946 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069728845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:14 Heat of formation + Delta-G solvation = -12.559446 kcal Electronic energy + Delta-G solvation = -13582.809303 eV Core-core repulsion = 11449.489378 eV Total energy + Delta-G solvation = -2133.319925 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83821 -36.27622 -34.41247 -32.35198 -31.74899 -28.52048 -26.56345 -24.77579 -23.66397 -21.86254 -20.16144 -18.24406 -16.89187 -16.56516 -15.95041 -15.60003 -15.32317 -15.24803 -14.16498 -13.96824 -13.73999 -13.37430 -13.23684 -12.95701 -12.69753 -12.64623 -12.18351 -12.04733 -11.87193 -11.57978 -11.34390 -10.99042 -10.87950 -10.36709 -9.45649 -8.55941 -7.79061 -5.20770 1.47465 1.49341 1.56040 2.55472 3.32291 3.69179 3.74700 4.07085 4.21049 4.31355 4.46258 4.60602 4.73225 4.87100 4.92630 4.97910 5.04634 5.08605 5.10477 5.19963 5.37324 5.43081 5.46033 5.63326 5.66379 5.85026 6.06983 6.34189 6.47897 6.72826 7.25377 7.98861 8.48506 9.25119 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039407 B = 0.012277 C = 0.010338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.367240 B = 2280.049918 C = 2707.878702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.182 3.818 3 H 0.054 0.946 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.093 4.093 7 H 0.052 0.948 8 C 0.079 3.921 9 N -0.860 5.860 10 C 0.166 3.834 11 N -0.606 5.606 12 C -0.263 4.263 13 H 0.058 0.942 14 C -0.048 4.048 15 N -0.921 5.921 16 Si 0.960 3.040 17 H -0.279 1.279 18 H -0.294 1.294 19 H -0.282 1.282 20 H 0.038 0.962 21 H 0.044 0.956 22 H 0.035 0.965 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.343 0.657 30 H 0.350 0.650 31 H 0.003 0.997 32 H 0.044 0.956 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -10.032 6.407 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.076 3.924 3 H 0.072 0.928 4 C -0.167 4.167 5 C -0.137 4.137 6 C -0.114 4.114 7 H 0.071 0.929 8 C -0.053 4.053 9 N -0.391 5.391 10 C 0.040 3.960 11 N -0.328 5.328 12 C -0.393 4.393 13 H 0.076 0.924 14 C -0.244 4.244 15 N -0.567 5.567 16 Si 0.789 3.211 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.208 1.208 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.719 -9.376 5.903 11.103 hybrid contribution 0.900 0.384 -0.022 0.979 sum 1.619 -8.992 5.880 10.865 Atomic orbital electron populations 1.21915 0.98294 0.98866 0.99903 1.20207 0.92186 0.95451 0.84545 0.92831 1.21923 0.99735 0.96802 0.98209 1.21413 1.00272 0.94847 0.97151 1.21521 0.99342 0.94416 0.96080 0.92923 1.21688 0.98737 0.92795 0.92048 1.58577 1.13200 1.19471 1.47842 1.20803 0.95782 0.83321 0.96076 1.44408 1.65046 1.04105 1.19277 1.19420 1.15540 0.92249 1.12096 0.92393 1.25625 0.98251 0.99267 1.01253 1.70195 1.24916 1.10601 1.51023 0.85457 0.79322 0.77641 0.78698 1.20550 1.21982 1.20844 0.94316 0.93712 0.94629 0.91402 0.93965 0.92137 0.90831 0.94023 0.91529 0.84403 0.83666 0.97940 0.93698 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.81 71.98 0.63 -5.33 16 2 C 0.18 8.80 2.32 44.83 0.10 8.90 16 3 H 0.05 3.00 5.98 -2.39 -0.01 2.99 16 4 C -0.13 -4.88 5.53 30.53 0.17 -4.71 16 5 C -0.10 -3.18 4.96 30.62 0.15 -3.02 16 6 C -0.09 -3.17 2.48 -10.72 -0.03 -3.20 16 7 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 8 C 0.08 2.07 6.18 86.30 0.53 2.60 16 9 N -0.86 -21.30 9.19 -186.71 -1.72 -23.02 16 10 C 0.17 7.27 5.21 86.36 0.45 7.72 16 11 N -0.61 -31.31 2.71 -676.06 -1.83 -33.15 16 12 C -0.26 -15.03 9.59 84.03 0.81 -14.23 16 13 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 14 C -0.05 -2.76 4.88 84.86 0.41 -2.34 16 15 N -0.92 -54.68 10.05 21.65 0.22 -54.46 16 16 Si 0.96 46.18 29.59 68.60 2.03 48.21 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 H 0.04 1.61 5.74 -2.39 -0.01 1.60 16 21 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.03 1.87 7.13 -2.39 -0.02 1.85 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 24 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.06 1.93 6.49 -2.39 -0.02 1.92 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.34 8.02 8.99 -89.69 -0.81 7.21 16 30 H 0.35 6.67 9.08 -89.70 -0.81 5.85 16 31 H 0.00 0.12 7.52 -2.38 -0.02 0.10 16 32 H 0.04 2.06 7.70 -2.39 -0.02 2.04 16 33 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -63.29 254.65 1.41 -61.88 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -0.53 Total: 14.15 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.24 Total: -13.62 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -3.33 Total: -110.63 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -63.29 1.41 -61.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069728845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.320 kcal (2) G-P(sol) polarization free energy of solvation -63.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds