Wall clock time and date at job start Mon Mar 30 2020 02:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99829 * 269.99759 * 4 3 2 6 6 H 1.07999 * 119.99645 * 141.43493 * 5 4 3 7 7 C 1.38815 * 119.99844 * 321.43457 * 5 4 3 8 8 N 1.31621 * 120.00102 * 339.25060 * 7 5 4 9 9 Si 1.86802 * 119.99836 * 159.24815 * 7 5 4 10 10 H 1.48495 * 109.46890 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47032 * 119.99783 * 9 7 5 12 12 H 1.48496 * 109.46987 * 239.99763 * 9 7 5 13 13 C 1.46500 * 120.00363 * 89.99744 * 4 3 2 14 14 H 1.09000 * 110.63965 * 2.15315 * 13 4 3 15 15 C 1.54595 * 110.72391 * 125.30302 * 13 4 3 16 16 C 1.53996 * 105.13894 * 140.31678 * 15 13 4 17 17 N 1.47896 * 107.05823 * 1.22469 * 16 15 13 18 18 C 1.48536 * 105.81863 * 334.66782 * 17 16 15 19 19 H 1.08999 * 109.47417 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47206 * 300.00784 * 1 2 3 21 21 H 1.09001 * 109.46536 * 59.99795 * 1 2 3 22 22 H 1.08994 * 109.46718 * 239.99233 * 2 1 3 23 23 H 1.09001 * 109.46536 * 120.00205 * 2 1 3 24 24 H 1.08998 * 109.47594 * 59.99453 * 3 2 1 25 25 H 1.09004 * 109.47233 * 300.00110 * 3 2 1 26 26 H 0.96996 * 119.99920 * 175.04557 * 8 7 5 27 27 H 1.08991 * 110.30944 * 21.39737 * 15 13 4 28 28 H 1.09003 * 110.30353 * 259.22987 * 15 13 4 29 29 H 1.08997 * 109.91277 * 241.86795 * 16 15 13 30 30 H 1.09004 * 109.91512 * 120.57444 * 16 15 13 31 31 H 1.00892 * 111.00181 * 95.18556 * 17 16 15 32 32 H 1.09006 * 110.66485 * 157.64736 * 18 17 16 33 33 H 1.09001 * 110.66842 * 280.77101 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1902 1.4422 1.1851 6 1 5.0936 0.8591 1.2866 7 6 3.7236 2.1916 2.2564 8 7 2.8978 3.1949 2.0476 9 14 4.2679 1.7759 3.9944 10 1 5.1914 0.6136 3.9591 11 1 4.9663 2.9446 4.5872 12 1 3.0791 1.4394 4.8182 13 6 4.2371 1.4425 -1.2696 14 1 3.5461 1.4809 -2.1117 15 6 5.2343 2.6225 -1.3258 16 6 6.4967 2.0505 -1.9972 17 7 6.2104 0.6375 -2.3269 18 6 5.1612 0.2029 -1.3695 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6768 1.9563 -0.8900 26 1 2.5154 3.6729 2.8001 27 1 5.4657 2.9704 -0.3192 28 1 4.8238 3.4365 -1.9233 29 1 7.3409 2.1079 -1.3101 30 1 6.7173 2.6070 -2.9081 31 1 5.8910 0.5460 -3.2795 32 1 4.6139 -0.6544 -1.7617 33 1 5.5988 -0.0301 -0.3988 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070902951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:22 Heat of formation + Delta-G solvation = 11.150144 kcal Electronic energy + Delta-G solvation = -13413.156431 eV Core-core repulsion = 11280.864631 eV Total energy + Delta-G solvation = -2132.291800 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.06046 -35.22432 -32.38885 -30.91355 -28.49625 -27.14212 -25.53678 -22.85155 -20.90386 -20.27871 -19.35053 -16.43044 -15.87393 -15.20428 -14.23029 -14.00535 -13.50727 -12.98678 -12.78151 -12.62380 -12.17688 -11.42935 -11.35868 -11.19847 -10.83825 -10.79909 -10.69850 -10.44199 -10.23969 -10.06288 -9.79018 -9.59619 -9.43068 -8.51075 -8.11241 -6.51341 -5.72709 -3.38844 3.35818 3.45207 3.48189 4.48192 4.88180 5.28869 5.40828 5.66525 5.69457 5.84847 5.90622 6.00362 6.13509 6.19472 6.29504 6.38015 6.51817 6.60519 6.63211 6.73842 6.87639 6.89842 6.99793 7.21327 7.26340 7.41320 7.73895 7.83663 7.89481 8.54087 9.21610 9.83020 10.42077 11.21417 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.015599 C = 0.011022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.846092 B = 1794.599383 C = 2539.698889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.148 3.852 4 N -0.574 5.574 5 C -0.250 4.250 6 H 0.061 0.939 7 C 0.012 3.988 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.144 3.856 14 H 0.050 0.950 15 C -0.162 4.162 16 C 0.045 3.955 17 N -0.681 5.681 18 C 0.028 3.972 19 H 0.039 0.961 20 H 0.050 0.950 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.019 0.981 26 H 0.252 0.748 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.324 0.676 32 H 0.057 0.943 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -3.290 -5.846 6.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.293 5.293 5 C -0.380 4.380 6 H 0.079 0.921 7 C -0.188 4.188 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.034 3.966 14 H 0.068 0.932 15 C -0.202 4.202 16 C -0.085 4.085 17 N -0.307 5.307 18 C -0.103 4.103 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.076 0.924 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.518 -3.420 -5.387 6.402 hybrid contribution -0.673 0.373 0.607 0.980 sum -0.155 -3.047 -4.780 5.671 Atomic orbital electron populations 1.21704 0.97637 0.99930 1.01035 1.22109 0.93558 1.01639 1.00640 1.20951 0.83531 0.92192 1.01177 1.43803 1.00635 1.84771 1.00107 1.18975 1.09299 1.20904 0.88780 0.92103 1.25180 1.00106 0.94324 0.99176 1.70088 1.34075 1.18623 1.29943 0.86418 0.78188 0.77988 0.85367 1.20004 1.21713 1.21505 1.21946 0.92475 0.92509 0.89637 0.93224 1.23118 0.95754 0.98921 1.02441 1.22639 0.98571 0.88346 0.98973 1.62867 1.42665 1.18808 1.06368 1.23566 0.91862 0.97919 0.96924 0.94153 0.93098 0.93729 0.94206 0.92406 0.89077 0.96290 0.93780 0.89250 0.93460 0.91455 0.93089 0.86238 0.92410 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.14 -2.78 6.26 -26.73 -0.17 -2.95 16 3 C 0.15 3.42 5.28 -4.05 -0.02 3.40 16 4 N -0.57 -13.90 2.48 -163.56 -0.40 -14.30 16 5 C -0.25 -6.61 7.76 -15.05 -0.12 -6.73 16 6 H 0.06 1.64 6.67 -52.49 -0.35 1.29 16 7 C 0.01 0.34 4.96 -17.43 -0.09 0.25 16 8 N -0.88 -25.12 11.50 55.49 0.64 -24.48 16 9 Si 0.89 21.41 29.61 -169.99 -5.03 16.38 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.14 3.02 3.60 -66.07 -0.24 2.78 16 14 H 0.05 1.00 7.85 -51.93 -0.41 0.59 16 15 C -0.16 -3.29 6.53 -25.37 -0.17 -3.45 16 16 C 0.04 0.77 7.51 -2.76 -0.02 0.75 16 17 N -0.68 -11.62 7.51 -110.09 -0.83 -12.45 16 18 C 0.03 0.54 7.10 -1.90 -0.01 0.53 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.09 2.40 5.57 -51.93 -0.29 2.11 16 25 H 0.02 0.42 7.93 -51.93 -0.41 0.01 16 26 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 27 H 0.09 2.13 6.97 -51.93 -0.36 1.77 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.32 4.79 8.92 -39.30 -0.35 4.44 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.85 6.55 -51.93 -0.34 1.51 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -27.57 263.37 -7.57 -35.14 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.45 Total: 3.22 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.46 Total: -7.48 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.59 Total: -51.23 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.57 -7.57 -35.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070902951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.290 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds