Wall clock time and date at job start Mon Mar 30 2020 02:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99829 * 269.99759 * 4 3 2 6 6 H 1.07999 * 119.99645 * 141.43493 * 5 4 3 7 7 C 1.38815 * 119.99844 * 321.43457 * 5 4 3 8 8 N 1.31621 * 120.00102 * 339.25060 * 7 5 4 9 9 Si 1.86802 * 119.99836 * 159.24815 * 7 5 4 10 10 H 1.48495 * 109.46890 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47032 * 119.99783 * 9 7 5 12 12 H 1.48496 * 109.46987 * 239.99763 * 9 7 5 13 13 C 1.46500 * 120.00363 * 89.99744 * 4 3 2 14 14 H 1.09000 * 110.63965 * 2.15315 * 13 4 3 15 15 C 1.54595 * 110.72391 * 125.30302 * 13 4 3 16 16 C 1.53996 * 105.13894 * 140.31678 * 15 13 4 17 17 N 1.47896 * 107.05823 * 1.22469 * 16 15 13 18 18 C 1.48536 * 105.81863 * 334.66782 * 17 16 15 19 19 H 1.08999 * 109.47417 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47206 * 300.00784 * 1 2 3 21 21 H 1.09001 * 109.46536 * 59.99795 * 1 2 3 22 22 H 1.08994 * 109.46718 * 239.99233 * 2 1 3 23 23 H 1.09001 * 109.46536 * 120.00205 * 2 1 3 24 24 H 1.08998 * 109.47594 * 59.99453 * 3 2 1 25 25 H 1.09004 * 109.47233 * 300.00110 * 3 2 1 26 26 H 0.96996 * 119.99920 * 175.04557 * 8 7 5 27 27 H 1.08991 * 110.30944 * 21.39737 * 15 13 4 28 28 H 1.09003 * 110.30353 * 259.22987 * 15 13 4 29 29 H 1.08997 * 109.91277 * 241.86795 * 16 15 13 30 30 H 1.09004 * 109.91512 * 120.57444 * 16 15 13 31 31 H 1.00892 * 111.00181 * 95.18556 * 17 16 15 32 32 H 1.09006 * 110.66485 * 157.64736 * 18 17 16 33 33 H 1.09001 * 110.66842 * 280.77101 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1902 1.4422 1.1851 6 1 5.0936 0.8591 1.2866 7 6 3.7236 2.1916 2.2564 8 7 2.8978 3.1949 2.0476 9 14 4.2679 1.7759 3.9944 10 1 5.1914 0.6136 3.9591 11 1 4.9663 2.9446 4.5872 12 1 3.0791 1.4394 4.8182 13 6 4.2371 1.4425 -1.2696 14 1 3.5461 1.4809 -2.1117 15 6 5.2343 2.6225 -1.3258 16 6 6.4967 2.0505 -1.9972 17 7 6.2104 0.6375 -2.3269 18 6 5.1612 0.2029 -1.3695 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6768 1.9563 -0.8900 26 1 2.5154 3.6729 2.8001 27 1 5.4657 2.9704 -0.3192 28 1 4.8238 3.4365 -1.9233 29 1 7.3409 2.1079 -1.3101 30 1 6.7173 2.6070 -2.9081 31 1 5.8910 0.5460 -3.2795 32 1 4.6139 -0.6544 -1.7617 33 1 5.5988 -0.0301 -0.3988 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070902951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:22 Heat of formation + Delta-G solvation = -6.764379 kcal Electronic energy + Delta-G solvation = -13413.933263 eV Core-core repulsion = 11280.864631 eV Total energy + Delta-G solvation = -2133.068632 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.68520 -36.95813 -34.15778 -32.74127 -30.05967 -28.76311 -27.41934 -24.58729 -22.45324 -21.93609 -21.10667 -18.30107 -17.41433 -17.06040 -16.12839 -15.70782 -15.14140 -14.57245 -14.49506 -14.11089 -13.75311 -13.29677 -13.04329 -12.82824 -12.73957 -12.46790 -12.27594 -12.06592 -12.02549 -11.72612 -11.58573 -11.29036 -11.22380 -10.49461 -9.62752 -8.48320 -7.74098 -5.45333 1.42470 1.46885 1.55989 2.51006 3.24054 3.37826 3.74297 4.08951 4.21696 4.33633 4.40872 4.53192 4.58515 4.63847 4.75106 4.80124 4.89785 5.08387 5.12088 5.19160 5.26339 5.35844 5.37863 5.52459 5.59009 5.71731 5.85496 5.88284 6.50104 6.61110 7.20733 7.89503 8.41905 9.14524 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.015599 C = 0.011022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.846092 B = 1794.599383 C = 2539.698889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.147 3.853 4 N -0.589 5.589 5 C -0.245 4.245 6 H 0.052 0.948 7 C -0.035 4.035 8 N -0.916 5.916 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.294 1.294 12 H -0.289 1.289 13 C 0.136 3.864 14 H 0.063 0.937 15 C -0.158 4.158 16 C 0.054 3.946 17 N -0.674 5.674 18 C 0.041 3.959 19 H 0.064 0.936 20 H 0.041 0.959 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.022 0.978 26 H 0.249 0.751 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.343 0.657 32 H 0.074 0.926 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -4.334 -7.205 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.021 3.979 4 N -0.308 5.308 5 C -0.375 4.375 6 H 0.070 0.930 7 C -0.232 4.232 8 N -0.560 5.560 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.221 1.221 12 H -0.215 1.215 13 C 0.027 3.973 14 H 0.081 0.919 15 C -0.199 4.199 16 C -0.076 4.076 17 N -0.302 5.302 18 C -0.090 4.090 19 H 0.083 0.917 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.159 0.841 32 H 0.093 0.907 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.676 -4.484 -6.774 8.152 hybrid contribution -0.699 0.703 0.942 1.368 sum -0.023 -3.781 -5.832 6.950 Atomic orbital electron populations 1.21643 0.95052 1.01656 1.01287 1.21924 0.95779 0.98917 1.00151 1.20906 0.83231 0.94062 0.99703 1.43992 1.01173 1.85009 1.00646 1.19046 1.08762 1.19763 0.89944 0.93035 1.25771 1.00824 0.94542 1.02083 1.70196 1.35642 1.19781 1.30390 0.85552 0.77675 0.77578 0.81734 1.19398 1.22095 1.21535 1.22161 0.92878 0.93659 0.88569 0.91916 1.23024 0.97386 0.99044 1.00449 1.22568 0.96524 0.88534 1.00010 1.62766 1.41798 1.18490 1.07143 1.23307 0.91718 0.97617 0.96355 0.91659 0.94003 0.92372 0.92987 0.94445 0.92343 0.95946 0.94218 0.93478 0.92922 0.92143 0.89776 0.84098 0.90726 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.91 71.98 0.71 -3.65 16 2 C -0.13 -4.95 6.26 30.59 0.19 -4.76 16 3 C 0.15 6.82 5.28 86.38 0.46 7.27 16 4 N -0.59 -28.57 2.48 -671.38 -1.66 -30.24 16 5 C -0.24 -13.15 7.76 84.03 0.65 -12.50 16 6 H 0.05 2.84 6.67 -2.91 -0.02 2.82 16 7 C -0.04 -1.93 4.96 84.86 0.42 -1.51 16 8 N -0.92 -53.31 11.50 21.65 0.25 -53.06 16 9 Si 0.95 44.82 29.61 68.60 2.03 46.85 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 C 0.14 5.56 3.60 46.20 0.17 5.73 16 14 H 0.06 2.39 7.85 -2.39 -0.02 2.37 16 15 C -0.16 -6.33 6.53 31.47 0.21 -6.12 16 16 C 0.05 1.73 7.51 86.45 0.65 2.38 16 17 N -0.67 -21.12 7.51 -502.20 -3.77 -24.89 16 18 C 0.04 1.52 7.10 86.65 0.61 2.13 16 19 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 3.14 5.57 -2.39 -0.01 3.13 16 25 H 0.02 0.99 7.93 -2.38 -0.02 0.97 16 26 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 27 H 0.05 2.28 6.97 -2.39 -0.02 2.27 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.34 8.81 8.92 -89.70 -0.80 8.01 16 32 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.06 2.43 6.55 -2.39 -0.02 2.42 16 Total: -1.00 -59.35 263.37 1.19 -58.16 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.27 Total: 14.19 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 4.07 Total: -11.03 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -5.19 Total: -108.19 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -59.35 1.19 -58.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070902951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.400 kcal (2) G-P(sol) polarization free energy of solvation -59.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds