Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 N 1.46894 * 109.46994 * 239.99487 * 2 1 3 5 5 C 1.53000 * 109.46915 * 119.99488 * 2 1 3 6 6 C 1.53045 * 109.46065 * 300.06864 * 5 2 1 7 7 C 1.53192 * 109.31292 * 178.61481 * 6 5 2 8 8 N 1.46920 * 108.77479 * 54.63619 * 7 6 5 9 9 C 1.36941 * 120.62954 * 126.41345 * 8 7 6 10 10 H 1.07997 * 119.99820 * 207.66227 * 9 8 7 11 11 C 1.38810 * 120.00020 * 27.66225 * 9 8 7 12 12 N 1.31615 * 120.00013 * 17.36752 * 11 9 8 13 13 Si 1.86795 * 119.99814 * 197.36706 * 11 9 8 14 14 H 1.48501 * 109.47387 * 60.00278 * 13 11 9 15 15 H 1.48502 * 109.46947 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47175 * 299.99898 * 13 11 9 17 17 C 1.46927 * 118.73951 * 306.39017 * 8 7 6 18 18 C 1.53033 * 109.45927 * 180.02562 * 5 2 1 19 19 H 1.08998 * 109.47492 * 300.00773 * 1 2 3 20 20 H 1.09001 * 109.46790 * 60.00814 * 1 2 3 21 21 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 22 22 H 1.00896 * 111.00108 * 296.04011 * 4 2 1 23 23 H 1.00896 * 111.00460 * 60.00129 * 4 2 1 24 24 H 1.08997 * 109.45004 * 60.02987 * 5 2 1 25 25 H 1.09002 * 109.49864 * 298.57079 * 6 5 2 26 26 H 1.09007 * 109.49657 * 58.66379 * 6 5 2 27 27 H 1.08995 * 109.58422 * 294.84675 * 7 6 5 28 28 H 1.09000 * 109.58265 * 174.42364 * 7 6 5 29 29 H 0.97006 * 120.00037 * 179.97438 * 12 11 9 30 30 H 1.09004 * 109.58646 * 293.82028 * 17 8 7 31 31 H 1.09002 * 109.58807 * 173.39832 * 17 8 7 32 32 H 1.09000 * 109.49684 * 301.33395 * 18 5 2 33 33 H 1.08995 * 109.50115 * 61.43473 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7211 1.2493 6 6 1.5283 -0.0004 2.4987 7 6 2.0120 -0.7450 3.7470 8 7 3.4739 -0.8764 3.6824 9 6 4.2592 -0.4506 4.7204 10 1 5.2728 -0.1280 4.5336 11 6 3.7524 -0.4336 6.0126 12 7 2.6726 -1.1269 6.3051 13 14 4.6031 0.5732 7.3362 14 1 4.6173 2.0036 6.9377 15 1 3.8698 0.4246 8.6190 16 1 5.9980 0.0922 7.5042 17 6 4.0773 -1.4737 2.4833 18 6 3.5703 -0.7205 1.2494 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.7503 -1.6649 -1.1907 23 1 1.6962 -0.2352 -2.0385 24 1 1.6769 -1.7489 1.2488 25 1 1.9112 1.0201 2.5125 26 1 0.4385 0.0196 2.4864 27 1 1.5573 -1.7350 3.7811 28 1 1.7347 -0.1823 4.6384 29 1 2.3187 -1.1153 7.2082 30 1 3.7910 -2.5232 2.4144 31 1 5.1627 -1.3920 2.5410 32 1 3.9344 -1.2131 0.3478 33 1 3.9337 0.3068 1.2752 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082475006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = 3.622149 kcal Electronic energy + Delta-G solvation = -13325.724040 eV Core-core repulsion = 11193.105801 eV Total energy + Delta-G solvation = -2132.618238 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.25132 -35.37067 -32.37577 -30.45712 -29.45997 -28.14168 -25.23055 -22.60380 -21.82104 -20.07898 -19.06148 -16.78584 -15.58435 -14.82205 -14.31494 -13.78174 -13.56723 -13.39684 -13.12074 -12.83369 -12.29877 -12.00538 -11.68121 -11.23484 -10.99127 -10.84746 -10.61819 -10.29559 -10.09252 -10.01734 -9.76490 -9.39862 -9.25145 -8.48103 -8.38456 -6.56597 -5.70910 -3.11925 3.42949 3.48094 3.49997 4.56665 4.73958 5.06930 5.32353 5.44397 5.50240 5.60878 5.77658 5.87331 5.96462 6.09940 6.24942 6.31827 6.34753 6.51111 6.73665 6.77929 6.89762 6.96882 7.00978 7.17328 7.34749 7.46642 7.60086 7.74590 7.86796 8.53995 9.30355 9.94893 10.52281 11.37481 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.063276 B = 0.009161 C = 0.008626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.398399 B = 3055.763494 C = 3245.318691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.075 0.925 4 N -0.842 5.842 5 C -0.069 4.069 6 C -0.137 4.137 7 C 0.172 3.828 8 N -0.593 5.593 9 C -0.249 4.249 10 H 0.064 0.936 11 C -0.001 4.001 12 N -0.905 5.905 13 Si 0.901 3.099 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.283 1.283 17 C 0.143 3.857 18 C -0.117 4.117 19 H 0.066 0.934 20 H 0.045 0.955 21 H 0.051 0.949 22 H 0.336 0.664 23 H 0.332 0.668 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.014 0.986 28 H 0.085 0.915 29 H 0.253 0.747 30 H 0.013 0.987 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 1.519 -11.061 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.093 0.907 4 N -0.370 5.370 5 C -0.088 4.088 6 C -0.176 4.176 7 C 0.046 3.954 8 N -0.316 5.316 9 C -0.379 4.379 10 H 0.082 0.918 11 C -0.199 4.199 12 N -0.550 5.550 13 Si 0.731 3.269 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.209 1.209 17 C 0.017 3.983 18 C -0.156 4.156 19 H 0.085 0.915 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.148 0.852 23 H 0.144 0.856 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.072 1.682 -10.615 11.178 hybrid contribution -0.753 0.333 0.526 0.977 sum -3.825 2.015 -10.089 10.976 Atomic orbital electron populations 1.22674 0.98439 1.01652 1.01822 1.21576 0.91451 0.98498 0.90789 0.90666 1.58908 1.67460 1.06560 1.04031 1.21036 0.96670 0.98405 0.92704 1.22292 0.98388 1.00043 0.96918 1.20744 0.83369 0.96659 0.94622 1.44063 1.02006 1.69967 1.15592 1.19178 0.96996 1.35960 0.85747 0.91823 1.25018 0.98520 0.99360 0.96972 1.70033 1.24661 1.41051 1.19257 0.86382 0.78902 0.80484 0.81099 1.21125 1.21687 1.20926 1.20959 0.96386 0.93984 0.87002 1.21908 0.94393 1.00821 0.98477 0.91500 0.93585 0.93001 0.85159 0.85613 0.92483 0.92841 0.93401 0.96775 0.89653 0.93715 0.96883 0.93152 0.92149 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 9.13 37.16 0.34 -1.96 16 2 C 0.09 1.24 2.95 -67.71 -0.20 1.04 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 N -0.84 -10.31 8.47 -4.67 -0.04 -10.35 16 5 C -0.07 -1.20 1.86 -90.58 -0.17 -1.37 16 6 C -0.14 -2.68 5.04 -26.61 -0.13 -2.81 16 7 C 0.17 4.24 5.31 -3.71 -0.02 4.22 16 8 N -0.59 -15.52 2.99 -172.32 -0.52 -16.04 16 9 C -0.25 -7.09 9.59 -15.06 -0.14 -7.24 16 10 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 11 C 0.00 -0.02 4.91 -17.43 -0.09 -0.10 16 12 N -0.91 -26.94 11.19 55.49 0.62 -26.32 16 13 Si 0.90 22.20 29.59 -169.99 -5.03 17.18 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.14 3.19 6.52 -3.71 -0.02 3.16 16 18 C -0.12 -2.19 5.22 -26.61 -0.14 -2.33 16 19 H 0.07 0.87 6.40 -51.93 -0.33 0.53 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.34 3.85 8.98 -39.29 -0.35 3.50 16 23 H 0.33 3.37 9.04 -39.29 -0.36 3.01 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.84 6.36 -51.92 -0.33 0.51 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 32 H 0.06 1.05 7.56 -51.93 -0.39 0.65 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 257.72 15.07 3.88 3.88 Total: -1.00 -29.87 257.72 -7.08 -36.94 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.42 Total: 2.09 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.58 Total: -7.38 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.07 Total: -52.71 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.87 -7.08 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082475006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.567 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds