Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 N 1.46894 * 109.46994 * 239.99487 * 2 1 3 5 5 C 1.53000 * 109.46915 * 119.99488 * 2 1 3 6 6 C 1.53045 * 109.46065 * 300.06864 * 5 2 1 7 7 C 1.53192 * 109.31292 * 178.61481 * 6 5 2 8 8 N 1.46920 * 108.77479 * 54.63619 * 7 6 5 9 9 C 1.36941 * 120.62954 * 126.41345 * 8 7 6 10 10 H 1.07997 * 119.99820 * 207.66227 * 9 8 7 11 11 C 1.38810 * 120.00020 * 27.66225 * 9 8 7 12 12 N 1.31615 * 120.00013 * 17.36752 * 11 9 8 13 13 Si 1.86795 * 119.99814 * 197.36706 * 11 9 8 14 14 H 1.48501 * 109.47387 * 60.00278 * 13 11 9 15 15 H 1.48502 * 109.46947 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47175 * 299.99898 * 13 11 9 17 17 C 1.46927 * 118.73951 * 306.39017 * 8 7 6 18 18 C 1.53033 * 109.45927 * 180.02562 * 5 2 1 19 19 H 1.08998 * 109.47492 * 300.00773 * 1 2 3 20 20 H 1.09001 * 109.46790 * 60.00814 * 1 2 3 21 21 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 22 22 H 1.00896 * 111.00108 * 296.04011 * 4 2 1 23 23 H 1.00896 * 111.00460 * 60.00129 * 4 2 1 24 24 H 1.08997 * 109.45004 * 60.02987 * 5 2 1 25 25 H 1.09002 * 109.49864 * 298.57079 * 6 5 2 26 26 H 1.09007 * 109.49657 * 58.66379 * 6 5 2 27 27 H 1.08995 * 109.58422 * 294.84675 * 7 6 5 28 28 H 1.09000 * 109.58265 * 174.42364 * 7 6 5 29 29 H 0.97006 * 120.00037 * 179.97438 * 12 11 9 30 30 H 1.09004 * 109.58646 * 293.82028 * 17 8 7 31 31 H 1.09002 * 109.58807 * 173.39832 * 17 8 7 32 32 H 1.09000 * 109.49684 * 301.33395 * 18 5 2 33 33 H 1.08995 * 109.50115 * 61.43473 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7211 1.2493 6 6 1.5283 -0.0004 2.4987 7 6 2.0120 -0.7450 3.7470 8 7 3.4739 -0.8764 3.6824 9 6 4.2592 -0.4506 4.7204 10 1 5.2728 -0.1280 4.5336 11 6 3.7524 -0.4336 6.0126 12 7 2.6726 -1.1269 6.3051 13 14 4.6031 0.5732 7.3362 14 1 4.6173 2.0036 6.9377 15 1 3.8698 0.4246 8.6190 16 1 5.9980 0.0922 7.5042 17 6 4.0773 -1.4737 2.4833 18 6 3.5703 -0.7205 1.2494 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.7503 -1.6649 -1.1907 23 1 1.6962 -0.2352 -2.0385 24 1 1.6769 -1.7489 1.2488 25 1 1.9112 1.0201 2.5125 26 1 0.4385 0.0196 2.4864 27 1 1.5573 -1.7350 3.7811 28 1 1.7347 -0.1823 4.6384 29 1 2.3187 -1.1153 7.2082 30 1 3.7910 -2.5232 2.4144 31 1 5.1627 -1.3920 2.5410 32 1 3.9344 -1.2131 0.3478 33 1 3.9337 0.3068 1.2752 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082475006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = -16.694611 kcal Electronic energy + Delta-G solvation = -13326.605041 eV Core-core repulsion = 11193.105801 eV Total energy + Delta-G solvation = -2133.499239 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.78202 -36.93895 -34.22311 -32.12318 -31.28800 -29.29137 -27.10760 -24.29813 -23.56800 -21.48181 -20.70621 -18.76027 -17.00013 -16.63808 -15.68225 -15.42004 -15.28663 -14.90944 -14.77193 -14.05417 -13.90692 -13.53156 -13.34388 -12.90821 -12.71591 -12.53797 -12.22632 -12.12888 -11.96829 -11.76795 -11.37799 -11.07548 -10.95587 -10.52750 -9.46868 -8.66625 -7.86885 -5.31948 1.45658 1.48492 1.55491 2.51557 3.26386 3.66730 3.77723 3.86029 4.10980 4.29791 4.45645 4.54705 4.59426 4.65082 4.80114 4.89616 4.93540 5.05536 5.12766 5.21591 5.38729 5.39536 5.41521 5.49112 5.56747 5.66761 5.80459 6.36423 6.39723 6.74365 7.15544 7.88091 8.39963 9.19067 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.063276 B = 0.009161 C = 0.008626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.398399 B = 3055.763494 C = 3245.318691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 H 0.070 0.930 4 N -0.845 5.845 5 C -0.064 4.064 6 C -0.123 4.123 7 C 0.177 3.823 8 N -0.612 5.612 9 C -0.266 4.266 10 H 0.064 0.936 11 C -0.053 4.053 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.278 1.278 15 H -0.292 1.292 16 H -0.275 1.275 17 C 0.138 3.862 18 C -0.102 4.102 19 H 0.058 0.942 20 H 0.067 0.933 21 H 0.054 0.946 22 H 0.343 0.657 23 H 0.348 0.652 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.069 0.931 27 H -0.008 1.008 28 H 0.051 0.949 29 H 0.250 0.750 30 H 0.009 0.991 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 2.198 -12.594 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.013 4.013 3 H 0.088 0.912 4 N -0.375 5.375 5 C -0.083 4.083 6 C -0.162 4.162 7 C 0.051 3.949 8 N -0.336 5.336 9 C -0.397 4.397 10 H 0.082 0.918 11 C -0.248 4.248 12 N -0.582 5.582 13 Si 0.796 3.204 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.201 1.201 17 C 0.012 3.988 18 C -0.141 4.141 19 H 0.077 0.923 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.156 0.844 23 H 0.162 0.838 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.163 2.362 -12.190 12.813 hybrid contribution -0.700 0.061 0.975 1.202 sum -3.863 2.423 -11.215 12.107 Atomic orbital electron populations 1.22613 0.96859 1.02121 1.02513 1.21314 0.92565 0.97632 0.89759 0.91196 1.58814 1.67622 1.07053 1.03991 1.20956 0.95548 0.98416 0.93399 1.22086 0.99658 0.98927 0.95545 1.20589 0.82952 0.95530 0.95842 1.44350 1.02479 1.70546 1.16227 1.19519 0.97407 1.35962 0.86778 0.91842 1.25812 0.99450 1.00443 0.99076 1.70192 1.26165 1.42410 1.19462 0.85324 0.78013 0.78958 0.78067 1.20456 1.21782 1.20052 1.21124 0.96288 0.94099 0.87257 1.21741 0.95436 0.99755 0.97181 0.92318 0.91423 0.92648 0.84420 0.83825 0.92743 0.93499 0.91208 0.99001 0.93050 0.94092 0.97297 0.93417 0.90085 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 9.13 71.98 0.66 -3.24 16 2 C 0.10 2.49 2.95 44.92 0.13 2.62 16 3 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 4 N -0.84 -17.84 8.47 -168.68 -1.43 -19.27 16 5 C -0.06 -2.11 1.86 -10.77 -0.02 -2.13 16 6 C -0.12 -4.73 5.04 30.67 0.15 -4.57 16 7 C 0.18 8.91 5.31 86.36 0.46 9.37 16 8 N -0.61 -32.53 2.99 -699.10 -2.09 -34.63 16 9 C -0.27 -15.39 9.59 84.03 0.81 -14.58 16 10 H 0.06 3.58 7.89 -2.91 -0.02 3.56 16 11 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 12 N -0.94 -57.10 11.19 21.65 0.24 -56.86 16 13 Si 0.97 46.12 29.59 68.60 2.03 48.15 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 16 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 17 C 0.14 6.12 6.52 86.36 0.56 6.69 16 18 C -0.10 -3.68 5.22 30.67 0.16 -3.52 16 19 H 0.06 1.36 6.40 -2.39 -0.02 1.34 16 20 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.34 6.69 8.98 -89.70 -0.81 5.89 16 23 H 0.35 5.75 9.04 -89.70 -0.81 4.93 16 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.07 2.37 6.36 -2.38 -0.02 2.35 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.05 2.92 6.04 -2.39 -0.01 2.91 16 29 H 0.25 14.72 8.31 -92.70 -0.77 13.94 16 30 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 32 H 0.08 2.60 7.56 -2.39 -0.02 2.59 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.38 257.72 1.55 -62.83 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -0.53 Total: 11.77 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 3.33 Total: -12.00 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -3.28 Total: -110.75 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -64.38 1.55 -62.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082475006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.136 kcal (2) G-P(sol) polarization free energy of solvation -64.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds