Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46848 * 2 1 4 4 H 1.09002 * 109.49165 * 55.21810 * 3 2 1 5 5 C 1.52782 * 109.59082 * 295.29550 * 3 2 1 6 6 N 1.47079 * 108.76421 * 186.36048 * 5 3 2 7 7 C 1.36945 * 120.87657 * 231.11665 * 6 5 3 8 8 H 1.07998 * 119.99611 * 27.53393 * 7 6 5 9 9 C 1.38808 * 119.99722 * 207.53208 * 7 6 5 10 10 N 1.31622 * 120.00215 * 20.96797 * 9 7 6 11 11 Si 1.86798 * 119.99807 * 200.95702 * 9 7 6 12 12 H 1.48493 * 109.47521 * 265.02272 * 11 9 7 13 13 H 1.48500 * 109.47053 * 25.02584 * 11 9 7 14 14 H 1.48507 * 109.46989 * 145.01897 * 11 9 7 15 15 C 1.47076 * 118.24285 * 50.84813 * 6 5 3 16 16 C 1.53233 * 108.51948 * 309.09059 * 15 6 5 17 17 N 1.46896 * 109.34297 * 53.82613 * 16 15 6 18 18 C 1.46903 * 111.00341 * 172.74434 * 17 16 15 19 19 H 1.08999 * 109.46692 * 185.74709 * 1 2 3 20 20 H 1.08997 * 109.47109 * 305.74864 * 1 2 3 21 21 H 1.08995 * 109.46891 * 65.74579 * 1 2 3 22 22 H 1.09001 * 109.47065 * 240.00566 * 2 1 3 23 23 H 1.08995 * 109.46971 * 119.99855 * 2 1 3 24 24 H 1.08999 * 109.55945 * 66.54161 * 5 3 2 25 25 H 1.09004 * 109.45245 * 306.11130 * 5 3 2 26 26 H 0.96994 * 119.99694 * 179.97438 * 10 9 7 27 27 H 1.09005 * 109.62940 * 68.79710 * 15 6 5 28 28 H 1.08993 * 109.62986 * 189.37977 * 15 6 5 29 29 H 1.09003 * 109.49416 * 173.78862 * 16 15 6 30 30 H 1.09003 * 109.49592 * 293.86623 * 16 15 6 31 31 H 1.08999 * 109.46648 * 66.65720 * 18 17 16 32 32 H 1.09002 * 109.47363 * 186.65700 * 18 17 16 33 33 H 1.09001 * 109.47383 * 306.66169 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6086 1.9808 0.8440 5 6 1.6309 2.1305 -1.3014 6 7 2.2572 3.4604 -1.3507 7 6 1.5115 4.5792 -1.6103 8 1 0.4634 4.6017 -1.3510 9 6 2.1029 5.6844 -2.2068 10 7 3.2201 5.5452 -2.8887 11 14 1.3130 7.3691 -2.0419 12 1 0.4558 7.6320 -3.2255 13 1 0.4831 7.4083 -0.8111 14 1 2.3725 8.4064 -1.9576 15 6 3.7046 3.5574 -1.1079 16 6 4.0310 2.8140 0.1917 17 7 3.5046 1.4448 0.1143 18 6 3.9439 0.6458 1.2661 19 1 -0.3633 -1.0225 0.1029 20 1 -0.3633 0.6004 0.8340 21 1 -0.3633 0.4221 -0.9369 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.5464 2.2351 -1.3335 25 1 1.9695 1.5347 -2.1490 26 1 3.6330 6.3174 -3.3058 27 1 4.2463 3.1014 -1.9366 28 1 3.9904 4.6049 -1.0122 29 1 5.1117 2.7809 0.3302 30 1 3.5718 3.3331 1.0330 31 1 3.4881 1.0379 2.1752 32 1 3.6405 -0.3916 1.1257 33 1 5.0293 0.6985 1.3521 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082478122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = 23.917024 kcal Electronic energy + Delta-G solvation = -13477.769768 eV Core-core repulsion = 11346.031581 eV Total energy + Delta-G solvation = -2131.738187 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.48123 -34.49337 -33.25421 -31.15673 -28.74702 -27.31478 -24.41446 -23.83604 -22.12750 -20.47179 -18.91770 -16.67399 -15.24679 -14.68931 -14.58329 -14.15878 -13.80234 -13.06620 -12.95628 -12.89903 -12.55830 -11.85735 -11.52447 -11.40708 -11.12470 -10.91274 -10.68545 -10.57916 -10.27308 -10.14960 -10.00651 -9.68642 -9.43631 -8.45201 -7.72608 -6.61866 -5.76255 -3.15341 3.38948 3.46419 3.49438 4.47477 4.54516 5.26315 5.32387 5.41411 5.55144 5.68664 5.70659 5.77666 5.94809 6.00778 6.10714 6.17048 6.22953 6.31928 6.34703 6.50730 6.55815 6.64081 6.74953 7.00445 7.27719 7.63556 7.71364 7.78055 7.86973 8.46465 9.23639 9.88256 10.48335 11.32836 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044571 B = 0.011016 C = 0.009555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.063839 B = 2541.212561 C = 2929.826994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.071 3.929 4 H 0.034 0.966 5 C 0.156 3.844 6 N -0.595 5.595 7 C -0.255 4.255 8 H 0.064 0.936 9 C 0.004 3.996 10 N -0.898 5.898 11 Si 0.897 3.103 12 H -0.287 1.287 13 H -0.279 1.279 14 H -0.289 1.289 15 C 0.179 3.821 16 C 0.035 3.965 17 N -0.536 5.536 18 C 0.023 3.977 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.024 0.976 26 H 0.253 0.747 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.015 0.985 32 H 0.064 0.936 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -8.359 6.702 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.039 4.039 4 H 0.052 0.948 5 C 0.030 3.970 6 N -0.318 5.318 7 C -0.384 4.384 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.542 5.542 11 Si 0.727 3.273 12 H -0.215 1.215 13 H -0.205 1.205 14 H -0.215 1.215 15 C 0.053 3.947 16 C -0.094 4.094 17 N -0.260 5.260 18 C -0.126 4.126 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.680 -8.416 6.175 10.461 hybrid contribution -0.584 1.292 0.831 1.644 sum -1.264 -7.124 7.006 10.072 Atomic orbital electron populations 1.21767 0.95902 1.00809 1.02244 1.21632 0.95446 0.96680 1.01849 1.22170 0.86911 0.94937 0.99909 0.94830 1.20935 0.96161 0.87062 0.92872 1.44109 1.04409 1.01335 1.81942 1.19142 0.94272 0.91413 1.33612 0.91801 1.25002 0.98155 0.99266 0.97100 1.70094 1.21090 1.29047 1.33958 0.86363 0.78439 0.84564 0.77936 1.21451 1.20480 1.21539 1.20793 0.84390 0.98705 0.90846 1.22877 0.97910 0.87858 1.00742 1.61950 1.10460 1.13614 1.40009 1.22406 1.00054 0.98399 0.91725 0.93228 0.93060 0.92145 0.91439 0.92479 0.92610 0.95844 0.93682 0.95434 0.90169 0.92105 0.95824 0.96655 0.91707 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.52 37.16 0.35 -1.64 16 2 C -0.12 -1.77 5.10 -26.73 -0.14 -1.90 16 3 C 0.07 1.33 2.06 -67.82 -0.14 1.19 16 4 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 5 C 0.16 3.48 5.53 -3.84 -0.02 3.46 16 6 N -0.60 -15.64 3.03 -172.30 -0.52 -16.16 16 7 C -0.25 -7.21 9.59 -15.06 -0.14 -7.35 16 8 H 0.06 1.77 7.91 -52.49 -0.42 1.36 16 9 C 0.00 0.11 4.81 -17.43 -0.08 0.02 16 10 N -0.90 -26.64 11.52 55.49 0.64 -26.00 16 11 Si 0.90 21.96 29.60 -169.99 -5.03 16.93 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.18 4.47 5.44 -3.61 -0.02 4.45 16 16 C 0.04 0.73 5.62 -3.71 -0.02 0.71 16 17 N -0.54 -10.17 4.73 -234.87 -1.11 -11.28 16 18 C 0.02 0.34 8.95 60.07 0.54 0.88 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.84 7.01 -51.93 -0.36 0.48 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.06 0.78 6.09 -51.93 -0.32 0.46 16 24 H 0.06 1.20 6.85 -51.93 -0.36 0.84 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 2.18 6.35 -51.93 -0.33 1.85 16 29 H 0.06 1.12 8.03 -51.93 -0.42 0.71 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.87 6.25 -51.93 -0.32 0.55 16 33 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 LS Contribution 256.79 15.07 3.87 3.87 Total: -1.00 -30.06 256.79 -7.29 -37.35 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.46 Total: -4.52 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 0.33 Total: -0.19 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.99 Total: -53.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.06 -7.29 -37.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.265 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds