Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46848 * 2 1 4 4 H 1.09002 * 109.49165 * 55.21810 * 3 2 1 5 5 C 1.52782 * 109.59082 * 295.29550 * 3 2 1 6 6 N 1.47079 * 108.76421 * 186.36048 * 5 3 2 7 7 C 1.36945 * 120.87657 * 231.11665 * 6 5 3 8 8 H 1.07998 * 119.99611 * 27.53393 * 7 6 5 9 9 C 1.38808 * 119.99722 * 207.53208 * 7 6 5 10 10 N 1.31622 * 120.00215 * 20.96797 * 9 7 6 11 11 Si 1.86798 * 119.99807 * 200.95702 * 9 7 6 12 12 H 1.48493 * 109.47521 * 265.02272 * 11 9 7 13 13 H 1.48500 * 109.47053 * 25.02584 * 11 9 7 14 14 H 1.48507 * 109.46989 * 145.01897 * 11 9 7 15 15 C 1.47076 * 118.24285 * 50.84813 * 6 5 3 16 16 C 1.53233 * 108.51948 * 309.09059 * 15 6 5 17 17 N 1.46896 * 109.34297 * 53.82613 * 16 15 6 18 18 C 1.46903 * 111.00341 * 172.74434 * 17 16 15 19 19 H 1.08999 * 109.46692 * 185.74709 * 1 2 3 20 20 H 1.08997 * 109.47109 * 305.74864 * 1 2 3 21 21 H 1.08995 * 109.46891 * 65.74579 * 1 2 3 22 22 H 1.09001 * 109.47065 * 240.00566 * 2 1 3 23 23 H 1.08995 * 109.46971 * 119.99855 * 2 1 3 24 24 H 1.08999 * 109.55945 * 66.54161 * 5 3 2 25 25 H 1.09004 * 109.45245 * 306.11130 * 5 3 2 26 26 H 0.96994 * 119.99694 * 179.97438 * 10 9 7 27 27 H 1.09005 * 109.62940 * 68.79710 * 15 6 5 28 28 H 1.08993 * 109.62986 * 189.37977 * 15 6 5 29 29 H 1.09003 * 109.49416 * 173.78862 * 16 15 6 30 30 H 1.09003 * 109.49592 * 293.86623 * 16 15 6 31 31 H 1.08999 * 109.46648 * 66.65720 * 18 17 16 32 32 H 1.09002 * 109.47363 * 186.65700 * 18 17 16 33 33 H 1.09001 * 109.47383 * 306.66169 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6086 1.9808 0.8440 5 6 1.6309 2.1305 -1.3014 6 7 2.2572 3.4604 -1.3507 7 6 1.5115 4.5792 -1.6103 8 1 0.4634 4.6017 -1.3510 9 6 2.1029 5.6844 -2.2068 10 7 3.2201 5.5452 -2.8887 11 14 1.3130 7.3691 -2.0419 12 1 0.4558 7.6320 -3.2255 13 1 0.4831 7.4083 -0.8111 14 1 2.3725 8.4064 -1.9576 15 6 3.7046 3.5574 -1.1079 16 6 4.0310 2.8140 0.1917 17 7 3.5046 1.4448 0.1143 18 6 3.9439 0.6458 1.2661 19 1 -0.3633 -1.0225 0.1029 20 1 -0.3633 0.6004 0.8340 21 1 -0.3633 0.4221 -0.9369 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.5464 2.2351 -1.3335 25 1 1.9695 1.5347 -2.1490 26 1 3.6330 6.3174 -3.3058 27 1 4.2463 3.1014 -1.9366 28 1 3.9904 4.6049 -1.0122 29 1 5.1117 2.7809 0.3302 30 1 3.5718 3.3331 1.0330 31 1 3.4881 1.0379 2.1752 32 1 3.6405 -0.3916 1.1257 33 1 5.0293 0.6985 1.3521 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082478122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = 3.691989 kcal Electronic energy + Delta-G solvation = -13478.646791 eV Core-core repulsion = 11346.031581 eV Total energy + Delta-G solvation = -2132.615210 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08198 -36.37036 -34.64259 -33.20001 -30.35723 -28.98234 -26.21703 -25.30562 -23.83910 -22.08666 -20.56232 -18.71351 -17.04202 -16.32354 -16.16018 -15.86976 -15.31835 -14.87881 -14.72377 -14.41480 -13.85715 -13.30325 -13.27206 -12.83511 -12.72587 -12.55538 -12.42986 -12.28964 -11.99033 -11.89609 -11.69699 -11.42172 -11.12260 -10.58446 -9.24907 -8.70241 -7.91327 -5.34858 1.44257 1.45881 1.56754 2.48995 3.03245 3.22974 3.62412 4.03875 4.14719 4.28835 4.42540 4.46982 4.56496 4.58651 4.67269 4.73741 4.87465 4.88088 4.96643 5.09497 5.12466 5.18667 5.28200 5.38182 5.48237 5.59178 5.61015 6.21167 6.31197 6.34925 7.09798 7.80540 8.36870 9.15972 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044571 B = 0.011016 C = 0.009555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.063839 B = 2541.212561 C = 2929.826994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.079 3.921 4 H 0.022 0.978 5 C 0.154 3.846 6 N -0.615 5.615 7 C -0.271 4.271 8 H 0.065 0.935 9 C -0.048 4.048 10 N -0.932 5.932 11 Si 0.967 3.033 12 H -0.284 1.284 13 H -0.270 1.270 14 H -0.289 1.289 15 C 0.186 3.814 16 C 0.049 3.951 17 N -0.549 5.549 18 C 0.024 3.976 19 H 0.076 0.924 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.010 0.990 26 H 0.252 0.748 27 H -0.001 1.001 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.017 0.983 31 H 0.021 0.979 32 H 0.086 0.914 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -9.462 8.151 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.031 4.031 4 H 0.040 0.960 5 C 0.028 3.972 6 N -0.339 5.339 7 C -0.401 4.401 8 H 0.082 0.918 9 C -0.244 4.244 10 N -0.577 5.577 11 Si 0.794 3.206 12 H -0.210 1.210 13 H -0.195 1.195 14 H -0.215 1.215 15 C 0.060 3.940 16 C -0.080 4.080 17 N -0.274 5.274 18 C -0.123 4.123 19 H 0.095 0.905 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.076 0.924 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.105 0.895 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.202 -9.553 7.644 12.293 hybrid contribution -0.426 1.575 0.349 1.669 sum -1.628 -7.977 7.993 11.409 Atomic orbital electron populations 1.21753 0.94658 1.02466 1.01600 1.21586 0.96471 0.93764 1.02867 1.22037 0.87132 0.96985 0.96970 0.96016 1.21062 0.96100 0.85481 0.94521 1.44412 1.04843 1.02434 1.82181 1.19473 0.94649 0.92609 1.33353 0.91775 1.25807 0.98919 1.02723 0.96901 1.70237 1.22639 1.29808 1.35012 0.85285 0.77486 0.79731 0.78089 1.21021 1.19519 1.21544 1.20577 0.83794 0.97402 0.92276 1.22587 0.99314 0.88619 0.97479 1.61910 1.10389 1.12606 1.42497 1.22493 1.01035 0.98643 0.90170 0.90517 0.93075 0.93373 0.91582 0.90143 0.92430 0.97192 0.93945 0.98250 0.93123 0.89822 0.96441 0.96050 0.89527 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.52 71.98 0.69 -2.86 16 2 C -0.11 -2.96 5.10 30.60 0.16 -2.80 16 3 C 0.08 2.86 2.06 44.84 0.09 2.95 16 4 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 5 C 0.15 6.89 5.53 86.20 0.48 7.37 16 6 N -0.61 -33.02 3.03 -699.03 -2.12 -35.14 16 7 C -0.27 -15.60 9.59 84.03 0.81 -14.79 16 8 H 0.06 3.60 7.91 -2.91 -0.02 3.58 16 9 C -0.05 -2.74 4.81 84.86 0.41 -2.33 16 10 N -0.93 -56.79 11.52 21.65 0.25 -56.54 16 11 Si 0.97 45.73 29.60 68.60 2.03 47.77 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 15 C 0.19 9.54 5.44 86.35 0.47 10.01 16 16 C 0.05 2.00 5.62 86.38 0.49 2.49 16 17 N -0.55 -19.88 4.73 -896.98 -4.24 -24.12 16 18 C 0.02 0.64 8.95 127.69 1.14 1.79 16 19 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.05 1.26 7.01 -2.39 -0.02 1.25 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.08 1.85 6.09 -2.39 -0.01 1.83 16 24 H 0.06 2.49 6.85 -2.39 -0.02 2.48 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 28 H 0.05 2.86 6.35 -2.39 -0.02 2.85 16 29 H 0.08 2.98 8.03 -2.39 -0.02 2.96 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.95 6.25 -2.39 -0.01 1.94 16 33 H 0.07 1.77 8.03 -2.39 -0.02 1.75 16 Total: -1.00 -65.29 256.79 1.69 -63.60 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.06 Total: 2.60 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.72 Total: 1.83 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -6.11 Total: -115.80 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.77 kcal Total: -65.29 1.69 -63.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.292 kcal (2) G-P(sol) polarization free energy of solvation -65.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds