Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.48622 * 2 1 4 4 C 1.53052 * 109.49011 * 239.95447 * 2 1 3 5 5 N 1.46956 * 109.36421 * 181.62716 * 4 2 1 6 6 C 1.46895 * 111.00029 * 183.18614 * 5 4 2 7 7 C 1.50706 * 109.47182 * 66.04779 * 6 5 4 8 8 H 1.08000 * 119.99302 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00436 * 179.72677 * 7 6 5 10 10 N 1.31515 * 119.99684 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00405 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47154 * 89.99418 * 11 9 7 13 13 H 1.48493 * 109.47010 * 209.99942 * 11 9 7 14 14 H 1.48502 * 109.46736 * 329.99638 * 11 9 7 15 15 C 1.46962 * 110.87873 * 59.31977 * 5 4 2 16 16 H 1.08999 * 109.48697 * 60.64465 * 15 5 4 17 17 C 1.53000 * 109.48653 * 180.70919 * 15 5 4 18 18 C 1.53052 * 109.36611 * 300.67910 * 15 5 4 19 19 N 1.46952 * 109.49063 * 120.05953 * 2 1 3 20 20 H 1.09003 * 109.46612 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46995 * 300.04505 * 1 2 3 22 22 H 1.08993 * 109.47172 * 60.05028 * 1 2 3 23 23 H 1.09000 * 109.48494 * 61.66211 * 4 2 1 24 24 H 1.08998 * 109.48758 * 301.59382 * 4 2 1 25 25 H 1.09001 * 109.47613 * 306.05125 * 6 5 4 26 26 H 1.08998 * 109.47678 * 186.05021 * 6 5 4 27 27 H 0.97004 * 120.00247 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47101 * 60.00554 * 17 15 5 29 29 H 1.08998 * 109.46677 * 180.02562 * 17 15 5 30 30 H 1.09002 * 109.47221 * 299.99976 * 17 15 5 31 31 H 1.09005 * 109.48648 * 298.43238 * 18 15 5 32 32 H 1.08994 * 109.50631 * 178.37887 * 18 15 5 33 33 H 1.00899 * 111.00523 * 303.15654 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7224 -1.2489 5 7 3.5097 -0.7550 -1.2266 6 6 4.0412 -1.3747 -2.4478 7 6 3.7199 -0.5028 -3.6343 8 1 3.1758 0.4196 -3.4950 9 6 4.1260 -0.8797 -4.8968 10 7 4.7942 -1.9998 -5.0656 11 14 3.7284 0.2014 -6.3675 12 1 4.8276 1.1779 -6.5756 13 1 3.5822 -0.6450 -7.5788 14 1 2.4593 0.9306 -6.1170 15 6 4.0000 -1.4489 -0.0275 16 1 3.6361 -2.4763 -0.0277 17 6 5.5300 -1.4489 -0.0276 18 6 3.4894 -0.7265 1.2214 19 7 2.0203 -0.6939 1.1990 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5146 0.8896 22 1 -0.3633 0.5130 -0.8904 23 1 1.7022 -0.1926 -2.1393 24 1 1.6545 -1.7416 -1.2629 25 1 3.5870 -2.3561 -2.5846 26 1 5.1220 -1.4838 -2.3592 27 1 5.0803 -2.2648 -5.9538 28 1 5.8933 -0.4212 -0.0265 29 1 5.8933 -1.9640 0.8616 30 1 5.8934 -1.9618 -0.9182 31 1 3.8756 0.2927 1.2354 32 1 3.8278 -1.2559 2.1120 33 1 1.6553 -0.2683 2.0379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083118666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -0.455584 kcal Electronic energy + Delta-G solvation = -13297.576724 eV Core-core repulsion = 11164.781661 eV Total energy + Delta-G solvation = -2132.795062 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.72180 -34.63803 -32.88896 -31.87930 -29.04238 -27.15775 -24.51378 -24.49362 -21.64156 -20.37919 -18.88039 -16.34920 -15.80730 -14.76193 -14.75435 -14.61432 -13.80280 -13.37609 -13.00035 -12.42529 -12.29439 -11.92593 -11.54172 -11.33421 -11.20241 -11.07834 -10.80471 -10.66767 -10.35976 -10.29377 -10.10457 -9.48835 -9.12743 -8.39410 -8.14620 -7.16388 -6.00080 -4.00881 3.33193 3.38967 3.42517 4.43990 4.47474 4.90303 5.30511 5.34676 5.41635 5.56609 5.74511 5.77104 5.83596 6.03105 6.06009 6.10895 6.19309 6.31116 6.44744 6.50855 6.68342 6.77727 6.83722 7.25973 7.40635 7.44577 7.64800 7.84399 8.15105 8.27912 8.61126 9.06611 9.62841 11.10813 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038371 B = 0.010741 C = 0.008850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.544137 B = 2606.165284 C = 3163.098436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 H 0.041 0.959 4 C 0.074 3.926 5 N -0.535 5.535 6 C 0.189 3.811 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.080 3.920 16 H 0.035 0.965 17 C -0.144 4.144 18 C 0.068 3.932 19 N -0.689 5.689 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.084 0.916 24 H 0.027 0.973 25 H -0.011 1.011 26 H 0.039 0.961 27 H 0.261 0.739 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 2.696 10.383 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.059 0.941 4 C -0.055 4.055 5 N -0.260 5.260 6 C 0.064 3.936 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.029 4.029 16 H 0.053 0.947 17 C -0.202 4.202 18 C -0.062 4.062 19 N -0.320 5.320 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.045 0.955 25 H 0.006 0.994 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.030 2.438 9.966 11.023 hybrid contribution -0.212 0.575 -0.686 0.920 sum -4.241 3.013 9.279 10.638 Atomic orbital electron populations 1.21764 0.94824 1.02205 1.01187 1.21634 0.94282 0.95944 0.90975 0.94061 1.22006 0.88977 0.98451 0.96066 1.62290 1.06978 1.53912 1.02862 1.19808 0.95861 0.92836 0.85123 1.21171 1.35498 1.06825 0.90958 0.92037 1.24981 0.95373 0.95293 0.98980 1.69960 1.38683 1.22488 1.22716 0.86515 0.78749 0.80252 0.81998 1.20684 1.21334 1.19894 1.21549 0.94897 0.95581 0.90903 0.94691 1.21854 0.94736 1.02156 1.01405 1.22005 0.87268 0.99081 0.97810 1.60562 1.08739 1.58216 1.04486 0.92084 0.93272 0.92033 0.89756 0.95509 0.99361 0.94306 0.92976 0.92305 0.93410 0.91356 0.94778 0.91369 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.46 37.16 0.35 -1.57 16 2 C 0.08 1.35 3.19 -67.66 -0.22 1.13 16 3 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 4 C 0.07 1.52 4.71 -3.77 -0.02 1.50 16 5 N -0.53 -12.03 4.52 -227.92 -1.03 -13.06 16 6 C 0.19 5.02 4.49 -4.98 -0.02 5.00 16 7 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 8 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 11 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 15 C 0.08 1.54 2.56 -67.65 -0.17 1.37 16 16 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 17 C -0.14 -2.54 8.89 37.16 0.33 -2.21 16 18 C 0.07 1.08 6.00 -3.77 -0.02 1.06 16 19 N -0.69 -10.59 6.55 -106.58 -0.70 -11.29 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.08 1.85 6.78 -51.93 -0.35 1.50 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 26 H 0.04 1.08 5.74 -51.93 -0.30 0.79 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.35 6.15 -51.93 -0.32 1.03 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.33 4.19 8.83 -39.29 -0.35 3.85 16 LS Contribution 260.91 15.07 3.93 3.93 Total: -1.00 -30.05 260.91 -7.71 -37.76 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.47 Total: -1.00 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.16 Total: -6.94 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.99 Total: -50.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.05 -7.71 -37.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.306 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds