Wall clock time and date at job start Mon Mar 30 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.48622 * 2 1 4 4 C 1.53052 * 109.49011 * 239.95447 * 2 1 3 5 5 N 1.46956 * 109.36421 * 181.62716 * 4 2 1 6 6 C 1.46895 * 111.00029 * 183.18614 * 5 4 2 7 7 C 1.50706 * 109.47182 * 66.04779 * 6 5 4 8 8 H 1.08000 * 119.99302 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00436 * 179.72677 * 7 6 5 10 10 N 1.31515 * 119.99684 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00405 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47154 * 89.99418 * 11 9 7 13 13 H 1.48493 * 109.47010 * 209.99942 * 11 9 7 14 14 H 1.48502 * 109.46736 * 329.99638 * 11 9 7 15 15 C 1.46962 * 110.87873 * 59.31977 * 5 4 2 16 16 H 1.08999 * 109.48697 * 60.64465 * 15 5 4 17 17 C 1.53000 * 109.48653 * 180.70919 * 15 5 4 18 18 C 1.53052 * 109.36611 * 300.67910 * 15 5 4 19 19 N 1.46952 * 109.49063 * 120.05953 * 2 1 3 20 20 H 1.09003 * 109.46612 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46995 * 300.04505 * 1 2 3 22 22 H 1.08993 * 109.47172 * 60.05028 * 1 2 3 23 23 H 1.09000 * 109.48494 * 61.66211 * 4 2 1 24 24 H 1.08998 * 109.48758 * 301.59382 * 4 2 1 25 25 H 1.09001 * 109.47613 * 306.05125 * 6 5 4 26 26 H 1.08998 * 109.47678 * 186.05021 * 6 5 4 27 27 H 0.97004 * 120.00247 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47101 * 60.00554 * 17 15 5 29 29 H 1.08998 * 109.46677 * 180.02562 * 17 15 5 30 30 H 1.09002 * 109.47221 * 299.99976 * 17 15 5 31 31 H 1.09005 * 109.48648 * 298.43238 * 18 15 5 32 32 H 1.08994 * 109.50631 * 178.37887 * 18 15 5 33 33 H 1.00899 * 111.00523 * 303.15654 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7224 -1.2489 5 7 3.5097 -0.7550 -1.2266 6 6 4.0412 -1.3747 -2.4478 7 6 3.7199 -0.5028 -3.6343 8 1 3.1758 0.4196 -3.4950 9 6 4.1260 -0.8797 -4.8968 10 7 4.7942 -1.9998 -5.0656 11 14 3.7284 0.2014 -6.3675 12 1 4.8276 1.1779 -6.5756 13 1 3.5822 -0.6450 -7.5788 14 1 2.4593 0.9306 -6.1170 15 6 4.0000 -1.4489 -0.0275 16 1 3.6361 -2.4763 -0.0277 17 6 5.5300 -1.4489 -0.0276 18 6 3.4894 -0.7265 1.2214 19 7 2.0203 -0.6939 1.1990 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5146 0.8896 22 1 -0.3633 0.5130 -0.8904 23 1 1.7022 -0.1926 -2.1393 24 1 1.6545 -1.7416 -1.2629 25 1 3.5870 -2.3561 -2.5846 26 1 5.1220 -1.4838 -2.3592 27 1 5.0803 -2.2648 -5.9538 28 1 5.8933 -0.4212 -0.0265 29 1 5.8933 -1.9640 0.8616 30 1 5.8934 -1.9618 -0.9182 31 1 3.8756 0.2927 1.2354 32 1 3.8278 -1.2559 2.1120 33 1 1.6553 -0.2683 2.0379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083118666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:03 Heat of formation + Delta-G solvation = -23.149469 kcal Electronic energy + Delta-G solvation = -13298.560804 eV Core-core repulsion = 11164.781661 eV Total energy + Delta-G solvation = -2133.779143 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26445 -36.26931 -34.73579 -33.61212 -30.45458 -29.11594 -26.35274 -25.81734 -23.48314 -21.90817 -20.43715 -18.53178 -17.23504 -16.59221 -16.38131 -16.10076 -15.35590 -15.11833 -14.59693 -14.07117 -13.88772 -13.56008 -13.08862 -12.83449 -12.72477 -12.63789 -12.56641 -12.38575 -12.13552 -11.89693 -11.79325 -11.24282 -11.13279 -10.59030 -9.42836 -9.03093 -8.21544 -6.31693 1.39186 1.41087 1.52091 2.38883 3.09952 3.23776 3.24943 3.94510 4.01994 4.22222 4.34947 4.36099 4.42170 4.72389 4.75185 4.80741 4.85638 4.94778 5.02353 5.08550 5.09380 5.24557 5.28587 5.36038 5.39697 5.63499 5.99298 6.07432 6.32186 6.58729 6.67077 6.84275 7.37659 8.89715 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038371 B = 0.010741 C = 0.008850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.544137 B = 2606.165284 C = 3163.098436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.090 3.910 3 H 0.039 0.961 4 C 0.074 3.926 5 N -0.541 5.541 6 C 0.204 3.796 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.970 3.030 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.264 1.264 15 C 0.072 3.928 16 H 0.016 0.984 17 C -0.137 4.137 18 C 0.076 3.924 19 N -0.690 5.690 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.008 0.992 25 H -0.050 1.050 26 H 0.021 0.979 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 4.094 11.608 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.020 4.020 3 H 0.057 0.943 4 C -0.055 4.055 5 N -0.266 5.266 6 C 0.078 3.922 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.794 3.206 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.037 4.037 16 H 0.034 0.966 17 C -0.194 4.194 18 C -0.054 4.054 19 N -0.324 5.324 20 H 0.075 0.925 21 H 0.097 0.903 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.026 0.974 25 H -0.033 1.033 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.820 3.848 11.230 12.813 hybrid contribution 0.047 0.084 -1.021 1.025 sum -4.773 3.932 10.210 11.936 Atomic orbital electron populations 1.21714 0.92258 1.02445 1.02817 1.21504 0.96213 0.94864 0.89413 0.94291 1.22027 0.87859 0.97680 0.97949 1.62276 1.08167 1.53646 1.02471 1.19459 0.94542 0.91036 0.87142 1.21456 1.35731 1.07004 0.92051 0.92148 1.25929 0.94923 0.96670 1.02173 1.70093 1.39510 1.24215 1.23664 0.85372 0.78994 0.78363 0.77836 1.19734 1.20684 1.18826 1.21764 0.95931 0.94875 0.91116 0.96551 1.21788 0.93703 1.02253 1.01690 1.21945 0.87596 0.99058 0.96755 1.60481 1.08491 1.58430 1.04984 0.92529 0.90264 0.91817 0.91809 0.97415 1.03266 0.96147 0.92678 0.92211 0.89656 0.94487 0.94487 0.88157 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.46 71.98 0.68 -2.64 16 2 C 0.09 2.84 3.19 44.92 0.14 2.98 16 3 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 4 C 0.07 3.09 4.71 86.31 0.41 3.50 16 5 N -0.54 -24.89 4.52 -875.02 -3.95 -28.85 16 6 C 0.20 11.43 4.49 85.56 0.38 11.82 16 7 C -0.52 -30.74 8.47 25.60 0.22 -30.52 16 8 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 9 C 0.00 0.05 5.46 84.65 0.46 0.52 16 10 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 11 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 C 0.07 2.76 2.56 44.92 0.12 2.88 16 16 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 17 C -0.14 -4.79 8.89 71.98 0.64 -4.15 16 18 C 0.08 2.22 6.00 86.31 0.52 2.74 16 19 N -0.69 -19.36 6.55 -491.12 -3.21 -22.58 16 20 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.06 2.89 6.78 -2.39 -0.02 2.87 16 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 25 H -0.05 -3.13 8.12 -2.39 -0.02 -3.15 16 26 H 0.02 1.21 5.74 -2.39 -0.01 1.20 16 27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 30 H 0.04 1.51 6.15 -2.39 -0.01 1.49 16 31 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.36 7.54 8.83 -89.69 -0.79 6.74 16 Total: -1.00 -66.48 260.91 -1.01 -67.49 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.28 Total: 6.90 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 3.57 Total: -12.87 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -6.88 Total: -108.67 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.48 -1.01 -67.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.344 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds