Wall clock time and date at job start Mon Mar 30 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46135 * 2 1 4 4 C 1.53035 * 109.45433 * 240.02612 * 2 1 3 5 5 C 1.53117 * 109.28067 * 180.80947 * 4 2 1 6 6 N 1.46899 * 109.52144 * 297.74847 * 5 4 2 7 7 C 1.50698 * 109.58053 * 177.59157 * 5 4 2 8 8 H 1.08010 * 119.99788 * 0.28503 * 7 5 4 9 9 C 1.37874 * 120.00368 * 180.28624 * 7 5 4 10 10 N 1.31511 * 120.00010 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00024 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47294 * 89.99817 * 11 9 7 13 13 H 1.48491 * 109.47158 * 209.99856 * 11 9 7 14 14 H 1.48504 * 109.47147 * 329.99990 * 11 9 7 15 15 C 1.53117 * 109.15945 * 57.65280 * 5 4 2 16 16 C 1.53033 * 109.28196 * 302.34618 * 15 5 4 17 17 N 1.46845 * 109.46378 * 119.97929 * 2 1 3 18 18 C 1.46903 * 110.99954 * 305.84495 * 17 2 1 19 19 H 1.08998 * 109.46794 * 299.99909 * 1 2 3 20 20 H 1.08992 * 109.47327 * 60.00272 * 1 2 3 21 21 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.50627 * 300.74696 * 4 2 1 23 23 H 1.09001 * 109.50255 * 60.86657 * 4 2 1 24 24 H 1.00897 * 111.00256 * 179.68040 * 6 5 4 25 25 H 1.00898 * 111.00109 * 303.63821 * 6 5 4 26 26 H 0.97001 * 120.00024 * 180.02562 * 10 9 7 27 27 H 1.09008 * 109.50509 * 182.40627 * 15 5 4 28 28 H 1.08999 * 109.53899 * 62.30974 * 15 5 4 29 29 H 1.09007 * 109.46547 * 299.16541 * 16 15 5 30 30 H 1.09000 * 109.46103 * 179.19001 * 16 15 5 31 31 H 1.08998 * 109.47039 * 59.99634 * 18 17 2 32 32 H 1.08997 * 109.47215 * 180.02562 * 18 17 2 33 33 H 1.09003 * 109.46876 * 300.00227 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5708 -0.7363 -1.2358 6 7 4.0759 0.6424 -1.2785 7 6 4.0793 -1.4962 -2.4337 8 1 3.3811 -1.9223 -3.1391 9 6 5.4357 -1.6475 -2.6293 10 7 6.2858 -1.1282 -1.7706 11 14 6.0660 -2.5888 -4.1145 12 1 6.2585 -1.6510 -5.2498 13 1 7.3613 -3.2327 -3.7793 14 1 5.0790 -3.6311 -4.4954 15 6 4.0546 -1.4191 0.0464 16 6 3.4866 -0.6780 1.2589 17 7 2.0193 -0.6918 1.1993 18 6 1.4375 -0.1106 2.4165 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.6656 -1.7447 -1.2577 23 1 1.6893 -0.1981 -2.1399 24 1 5.0847 0.6585 -1.2648 25 1 3.7173 1.1342 -2.0832 26 1 7.2401 -1.2343 -1.9084 27 1 5.1438 -1.3952 0.0828 28 1 3.7128 -2.4540 0.0596 29 1 3.8406 0.3530 1.2530 30 1 3.8175 -1.1704 2.1733 31 1 0.3519 -0.2010 2.3793 32 1 1.8170 -0.6412 3.2898 33 1 1.7123 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:21 Heat of formation + Delta-G solvation = -4.561608 kcal Electronic energy + Delta-G solvation = -13713.287323 eV Core-core repulsion = 11580.314210 eV Total energy + Delta-G solvation = -2132.973113 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.52574 -34.79414 -31.71303 -31.31301 -28.69560 -26.49085 -25.68935 -24.09690 -21.61677 -19.99414 -17.93067 -16.33337 -15.01086 -14.75262 -14.38846 -14.02028 -13.81060 -13.06646 -12.73260 -12.29787 -11.88738 -11.50871 -11.24456 -11.11911 -11.03392 -10.99059 -10.74977 -10.32781 -10.05177 -10.02098 -9.74894 -9.32051 -8.86104 -8.46174 -7.58930 -6.97707 -5.97303 -4.15663 3.24913 3.32887 3.36781 4.37340 4.70497 5.19868 5.62069 5.68803 5.77404 5.93310 6.02562 6.19075 6.22366 6.36093 6.44445 6.49557 6.55881 6.66914 6.72841 6.79422 7.02538 7.19443 7.42258 7.61086 7.81472 7.85324 8.00843 8.12199 8.30692 8.78924 9.06326 9.23854 9.56587 10.95582 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057502 B = 0.011183 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.819043 B = 2503.308028 C = 2710.200294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 H 0.046 0.954 4 C -0.088 4.088 5 C 0.235 3.765 6 N -0.849 5.849 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.067 3.933 10 N -0.892 5.892 11 Si 0.891 3.109 12 H -0.283 1.283 13 H -0.286 1.286 14 H -0.275 1.275 15 C -0.093 4.093 16 C 0.063 3.937 17 N -0.538 5.538 18 C 0.024 3.976 19 H 0.046 0.954 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.352 0.648 25 H 0.308 0.692 26 H 0.262 0.738 27 H 0.091 0.909 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 2.126 4.010 7.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 H 0.064 0.936 4 C -0.127 4.127 5 C 0.143 3.857 6 N -0.378 5.378 7 C -0.578 4.578 8 H 0.070 0.930 9 C -0.134 4.134 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.209 1.209 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.131 4.131 16 C -0.064 4.064 17 N -0.264 5.264 18 C -0.125 4.125 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.168 0.832 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.492 1.733 4.728 8.216 hybrid contribution 1.133 -0.052 -1.689 2.035 sum -5.359 1.681 3.039 6.386 Atomic orbital electron populations 1.21969 0.96476 1.01589 1.00469 1.21538 0.92818 0.96539 0.91053 0.93572 1.21606 0.98155 0.98863 0.94049 1.18299 0.88590 0.86348 0.92440 1.59470 1.16357 1.16699 1.45294 1.21942 0.91782 1.34990 1.09069 0.92988 1.24975 0.96932 0.95294 0.96224 1.69677 1.02303 1.45784 1.35432 0.86615 0.78234 0.80194 0.83027 1.20879 1.21226 1.20012 1.21537 1.02297 0.96904 0.92398 1.22122 0.85670 0.99652 0.98958 1.62024 1.08658 1.54363 1.01315 1.22356 0.99855 0.96787 0.93488 0.93489 0.92941 0.92500 0.92717 0.93603 0.83201 0.88379 0.92761 0.89100 0.94000 0.94505 0.93570 0.91981 0.92497 0.96597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.77 37.16 0.33 -2.00 16 2 C 0.09 1.70 2.30 -67.72 -0.16 1.54 16 3 H 0.05 0.95 7.69 -51.93 -0.40 0.55 16 4 C -0.09 -1.91 4.24 -26.65 -0.11 -2.02 16 5 C 0.23 5.67 0.52 -132.63 -0.07 5.60 16 6 N -0.85 -19.88 7.54 -0.10 0.00 -19.88 16 7 C -0.54 -14.39 8.21 -34.44 -0.28 -14.67 16 8 H 0.05 1.41 7.75 -52.48 -0.41 1.01 16 9 C 0.07 1.79 5.21 -17.82 -0.09 1.69 16 10 N -0.89 -23.96 9.58 55.43 0.53 -23.43 16 11 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.09 -2.23 4.79 -26.65 -0.13 -2.36 16 16 C 0.06 1.33 5.32 -3.83 -0.02 1.31 16 17 N -0.54 -10.35 4.75 -234.92 -1.11 -11.47 16 18 C 0.02 0.38 9.05 60.07 0.54 0.92 16 19 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.35 8.90 6.95 -39.29 -0.27 8.63 16 25 H 0.31 6.98 8.98 -39.29 -0.35 6.63 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.09 2.39 6.15 -51.92 -0.32 2.07 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.81 7.69 -51.93 -0.40 0.41 16 30 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16 32 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 252.20 15.07 3.80 3.80 Total: -1.00 -26.42 252.20 -7.11 -33.53 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.31 Total: 11.47 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 0.01 Total: -9.98 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.58 Total: -54.77 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.42 -7.11 -33.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.969 kcal (2) G-P(sol) polarization free energy of solvation -26.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds