Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.45215 * 2 1 4 4 C 1.53037 * 109.46471 * 119.97163 * 2 1 3 5 5 C 1.53114 * 109.31211 * 179.21882 * 4 2 1 6 6 N 1.46903 * 109.52485 * 182.42092 * 5 4 2 7 7 C 1.50699 * 109.52527 * 62.29545 * 5 4 2 8 8 H 1.08006 * 119.99815 * 359.97438 * 7 5 4 9 9 C 1.37880 * 120.00299 * 180.02562 * 7 5 4 10 10 N 1.31507 * 119.99758 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 119.99823 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47366 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47057 * 119.99986 * 11 9 7 14 14 H 1.48500 * 109.46868 * 239.99463 * 11 9 7 15 15 C 1.53126 * 109.16239 * 302.32855 * 5 4 2 16 16 C 1.53037 * 109.27880 * 57.65311 * 15 5 4 17 17 N 1.46850 * 109.52028 * 300.82273 * 16 15 5 18 18 C 1.46900 * 110.99740 * 185.83738 * 17 16 15 19 19 H 1.08999 * 109.47568 * 300.02393 * 1 2 3 20 20 H 1.08997 * 109.47253 * 60.02734 * 1 2 3 21 21 H 1.09007 * 109.46539 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.50283 * 59.25699 * 4 2 1 23 23 H 1.09003 * 109.50113 * 299.17886 * 4 2 1 24 24 H 1.00900 * 111.00128 * 179.97438 * 6 5 4 25 25 H 1.00901 * 110.99548 * 303.95519 * 6 5 4 26 26 H 0.97004 * 119.99991 * 180.02562 * 10 9 7 27 27 H 1.08997 * 109.50509 * 177.59319 * 15 5 4 28 28 H 1.09006 * 109.49902 * 297.71480 * 15 5 4 29 29 H 1.08997 * 109.46525 * 60.83781 * 16 15 5 30 30 H 1.08999 * 109.46457 * 180.82041 * 16 15 5 31 31 H 1.09002 * 109.46981 * 56.04744 * 18 17 16 32 32 H 1.09003 * 109.47078 * 176.04843 * 18 17 16 33 33 H 1.09002 * 109.47729 * 296.04862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5710 -0.7359 1.2366 6 7 4.0649 -1.4772 2.4048 7 6 4.0890 0.6786 1.2819 8 1 3.3962 1.5065 1.3164 9 6 5.4472 0.9158 1.2784 10 7 6.2906 -0.0923 1.2359 11 14 6.0892 2.6691 1.3352 12 1 4.9446 3.6142 1.3785 13 1 6.9274 2.8502 2.5477 14 1 6.9060 2.9366 0.1243 15 6 4.0558 -1.4189 -0.0453 16 6 3.4882 -0.6781 -1.2582 17 7 2.0209 -0.6923 -1.1994 18 6 1.4397 -0.1114 -2.4171 19 1 -0.3634 0.5142 0.8897 20 1 -0.3633 0.5134 -0.8902 21 1 -0.3633 -1.0278 0.0005 22 1 1.6660 -1.7447 1.2576 23 1 1.6889 -0.1985 2.1399 24 1 5.0735 -1.5013 2.4178 25 1 3.7010 -1.0866 3.2611 26 1 7.2462 0.0746 1.2338 27 1 5.1449 -1.3947 -0.0810 28 1 3.7135 -2.4537 -0.0580 29 1 3.8419 0.3529 -1.2523 30 1 3.8196 -1.1706 -2.1723 31 1 1.8159 -0.6453 -3.2897 32 1 0.3538 -0.1979 -2.3784 33 1 1.7181 0.9402 -2.4867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = -3.812030 kcal Electronic energy + Delta-G solvation = -13853.851824 eV Core-core repulsion = 11720.911215 eV Total energy + Delta-G solvation = -2132.940609 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.55723 -34.76780 -31.76896 -31.22514 -29.00050 -26.23084 -25.36465 -24.33496 -21.63911 -19.77381 -18.57417 -15.84335 -14.98723 -14.81488 -14.51663 -13.88849 -13.65217 -13.22764 -12.77599 -12.34017 -11.75239 -11.57501 -11.45094 -11.16016 -11.04691 -10.94529 -10.59981 -10.52348 -10.10095 -9.82482 -9.54863 -9.40282 -8.87241 -8.49989 -7.47446 -7.05652 -5.99644 -4.17179 3.20386 3.30059 3.33420 4.34324 4.72549 5.17241 5.61633 5.69418 5.79188 5.96400 6.03462 6.20196 6.22177 6.32190 6.40081 6.54209 6.57550 6.73435 6.78326 6.93907 7.13457 7.25316 7.32569 7.53916 7.69449 7.87123 8.01078 8.13308 8.30975 8.78759 9.06662 9.24945 9.55105 10.93431 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036381 B = 0.014086 C = 0.013073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.451426 B = 1987.254586 C = 2141.358219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.045 0.955 4 C -0.088 4.088 5 C 0.233 3.767 6 N -0.851 5.851 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.885 3.115 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.093 4.093 16 C 0.071 3.929 17 N -0.539 5.539 18 C 0.023 3.977 19 H 0.052 0.948 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.353 0.647 25 H 0.309 0.691 26 H 0.262 0.738 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 0.509 -3.247 7.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.063 0.937 4 C -0.126 4.126 5 C 0.142 3.858 6 N -0.379 5.379 7 C -0.573 4.573 8 H 0.069 0.931 9 C -0.134 4.134 10 N -0.530 5.530 11 Si 0.714 3.286 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.132 4.132 16 C -0.056 4.056 17 N -0.264 5.264 18 C -0.126 4.126 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.169 0.831 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.539 -0.655 -3.539 7.464 hybrid contribution 1.177 2.908 0.152 3.141 sum -5.362 2.253 -3.387 6.731 Atomic orbital electron populations 1.21953 0.96278 1.01594 1.00554 1.21525 0.92941 0.96503 0.90904 0.93742 1.21524 0.98258 0.98433 0.94419 1.18335 0.88670 0.90337 0.88505 1.59402 1.16565 1.57770 1.04197 1.21961 0.91602 0.93488 1.50240 0.93092 1.24959 0.97009 0.96694 0.94743 1.69672 1.02439 1.29700 1.51162 0.86646 0.78882 0.85469 0.77632 1.20026 1.21042 1.21044 1.21445 1.02419 0.95882 0.93469 1.21987 0.85352 0.99885 0.98422 1.62073 1.08777 1.54263 1.01310 1.22358 0.99838 0.96896 0.93459 0.92909 0.93406 0.92441 0.93121 0.93662 0.83070 0.88267 0.92776 0.89064 0.94941 0.94261 0.93420 0.92431 0.91942 0.96539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.77 37.16 0.33 -2.03 16 2 C 0.09 1.79 2.23 -67.68 -0.15 1.64 16 3 H 0.04 0.98 6.78 -51.92 -0.35 0.63 16 4 C -0.09 -1.91 4.38 -26.65 -0.12 -2.03 16 5 C 0.23 5.65 0.68 -132.63 -0.09 5.56 16 6 N -0.85 -20.49 8.86 -0.09 0.00 -20.49 16 7 C -0.53 -13.90 6.39 -34.44 -0.22 -14.12 16 8 H 0.05 1.37 6.87 -52.48 -0.36 1.01 16 9 C 0.07 1.77 5.21 -17.82 -0.09 1.67 16 10 N -0.89 -23.74 9.54 55.43 0.53 -23.21 16 11 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 C -0.09 -2.26 5.00 -26.65 -0.13 -2.39 16 16 C 0.07 1.56 5.26 -3.83 -0.02 1.54 16 17 N -0.54 -10.68 4.75 -234.85 -1.12 -11.80 16 18 C 0.02 0.38 9.06 60.06 0.54 0.92 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.05 0.69 6.32 -51.93 -0.33 0.36 16 21 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 22 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.35 9.07 6.92 -39.29 -0.27 8.80 16 25 H 0.31 7.10 8.98 -39.29 -0.35 6.75 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.94 7.31 -51.93 -0.38 0.56 16 30 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.06 0.91 6.20 -51.93 -0.32 0.58 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 249.77 15.07 3.76 3.76 Total: -1.00 -26.43 249.77 -6.99 -33.42 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.19 Total: 11.78 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 0.05 Total: -9.23 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.59 Total: -55.50 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.43 -6.99 -33.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.607 kcal (2) G-P(sol) polarization free energy of solvation -26.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds