Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.45947 * 2 1 4 4 C 1.53032 * 109.46482 * 119.96431 * 2 1 3 5 5 C 1.53123 * 109.28121 * 179.19636 * 4 2 1 6 6 N 1.46899 * 109.51980 * 62.31439 * 5 4 2 7 7 C 1.50702 * 109.52474 * 182.44152 * 5 4 2 8 8 H 1.07995 * 119.99724 * 0.02562 * 7 5 4 9 9 C 1.37877 * 119.99892 * 180.02562 * 7 5 4 10 10 N 1.31514 * 119.99907 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00131 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46825 * 89.99699 * 11 9 7 13 13 H 1.48498 * 109.47352 * 210.00130 * 11 9 7 14 14 H 1.48502 * 109.47025 * 330.00319 * 11 9 7 15 15 C 1.53124 * 109.16220 * 302.35028 * 5 4 2 16 16 C 1.53035 * 109.27475 * 57.64849 * 15 5 4 17 17 N 1.46846 * 109.52744 * 300.82106 * 16 15 5 18 18 C 1.46898 * 111.00056 * 185.84176 * 17 16 15 19 19 H 1.09000 * 109.46710 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47188 * 299.97418 * 1 2 3 21 21 H 1.08998 * 109.47175 * 59.98023 * 1 2 3 22 22 H 1.09001 * 109.50949 * 299.14218 * 4 2 1 23 23 H 1.09000 * 109.50361 * 59.25965 * 4 2 1 24 24 H 1.00904 * 111.00032 * 179.97438 * 6 5 4 25 25 H 1.00894 * 111.00114 * 303.95865 * 6 5 4 26 26 H 0.97003 * 119.99721 * 180.02562 * 10 9 7 27 27 H 1.08993 * 109.50112 * 297.71243 * 15 5 4 28 28 H 1.08992 * 109.50394 * 177.58991 * 15 5 4 29 29 H 1.09008 * 109.45841 * 180.80263 * 16 15 5 30 30 H 1.09003 * 109.46290 * 60.84246 * 16 15 5 31 31 H 1.08997 * 109.47063 * 56.04360 * 18 17 16 32 32 H 1.08993 * 109.47414 * 176.04888 * 18 17 16 33 33 H 1.09004 * 109.47400 * 296.04746 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5710 -0.7358 1.2357 6 7 4.0759 0.6430 1.2796 7 6 4.0784 -1.4964 2.4336 8 1 3.3796 -1.9268 3.1356 9 6 5.4348 -1.6427 2.6335 10 7 6.2857 -1.1180 1.7789 11 14 6.0638 -2.5861 4.1180 12 1 6.2124 -4.0211 3.7659 13 1 7.3810 -2.0386 4.5307 14 1 5.0978 -2.4486 5.2375 15 6 4.0549 -1.4186 -0.0466 16 6 3.4865 -0.6777 -1.2590 17 7 2.0193 -0.6918 -1.1993 18 6 1.4373 -0.1108 -2.4165 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5134 0.8902 21 1 -0.3633 0.5141 -0.8898 22 1 1.6895 -0.1979 2.1400 23 1 1.6660 -1.7445 1.2578 24 1 5.0848 0.6591 1.2715 25 1 3.6991 1.1904 0.5205 26 1 7.2399 -1.2213 1.9193 27 1 3.7127 -2.4534 -0.0592 28 1 5.1440 -1.3944 -0.0831 29 1 3.8176 -1.1699 -2.1735 30 1 3.8403 0.3533 -1.2532 31 1 1.8130 -0.6446 -3.2894 32 1 0.3515 -0.1973 -2.3771 33 1 1.7156 0.9408 -2.4862 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = 0.248177 kcal Electronic energy + Delta-G solvation = -13733.478587 eV Core-core repulsion = 11600.714042 eV Total energy + Delta-G solvation = -2132.764545 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.83111 -34.75641 -31.77478 -31.43577 -28.53779 -26.78746 -25.79859 -24.12099 -21.72597 -20.23357 -17.93688 -16.22951 -15.17174 -14.86776 -14.52067 -14.13543 -13.69135 -13.24340 -12.84756 -12.43906 -12.00421 -11.56479 -11.34720 -11.30702 -11.14090 -10.93273 -10.69767 -10.38540 -10.11132 -10.02174 -9.96870 -9.11099 -8.81995 -8.49938 -7.69580 -6.90328 -5.99573 -4.04037 3.32501 3.39271 3.43629 4.45026 4.51155 5.26745 5.49300 5.54433 5.62826 5.77524 5.89316 6.00658 6.08831 6.15286 6.26331 6.37759 6.46340 6.51469 6.57704 6.80758 6.88266 7.10961 7.29776 7.38969 7.67138 7.77422 7.85522 8.09934 8.34819 8.79285 9.14446 9.30242 9.63378 11.06384 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057782 B = 0.011183 C = 0.010325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.460086 B = 2503.235519 C = 2711.216437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.090 4.090 5 C 0.241 3.759 6 N -0.842 5.842 7 C -0.490 4.490 8 H 0.057 0.943 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.137 4.137 16 C 0.055 3.945 17 N -0.537 5.537 18 C 0.022 3.978 19 H 0.059 0.941 20 H 0.055 0.945 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.356 0.644 25 H 0.288 0.712 26 H 0.260 0.740 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 1.808 -5.544 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.128 4.128 5 C 0.150 3.850 6 N -0.375 5.375 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.132 4.132 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.177 4.177 16 C -0.073 4.073 17 N -0.262 5.262 18 C -0.127 4.127 19 H 0.078 0.922 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.173 0.827 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.746 1.383 -4.806 8.397 hybrid contribution 1.134 0.129 -0.349 1.193 sum -5.612 1.512 -5.155 7.768 Atomic orbital electron populations 1.21922 0.95716 1.01884 1.00704 1.21708 0.94012 0.95755 0.91435 0.94552 1.21655 0.98155 0.99030 0.93966 1.18347 0.88642 0.85785 0.92218 1.59405 1.15844 1.13547 1.48685 1.21081 0.91473 1.32023 1.08355 0.92507 1.24937 0.96908 0.95200 0.96199 1.69620 1.02143 1.46232 1.36076 0.86548 0.78108 0.79750 0.83223 1.20900 1.21371 1.19987 1.22391 1.02638 0.98728 0.93926 1.22259 0.86114 0.98576 1.00309 1.62003 1.08140 1.54597 1.01467 1.22391 1.00187 0.96720 0.93356 0.92217 0.92576 0.93435 0.92445 0.92476 0.82682 0.90108 0.92940 0.93425 0.88919 0.92691 0.96183 0.92285 0.91626 0.96581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.76 37.16 0.33 -1.88 16 2 C 0.08 1.46 2.21 -67.73 -0.15 1.31 16 3 H 0.04 0.71 6.64 -51.92 -0.34 0.36 16 4 C -0.09 -1.94 4.30 -26.65 -0.11 -2.06 16 5 C 0.24 5.90 0.64 -132.63 -0.09 5.81 16 6 N -0.84 -20.34 8.77 -0.09 0.00 -20.34 16 7 C -0.49 -13.40 8.22 -34.44 -0.28 -13.69 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.07 1.84 5.21 -17.82 -0.09 1.75 16 10 N -0.90 -24.53 9.58 55.43 0.53 -24.00 16 11 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.14 -3.22 4.80 -26.65 -0.13 -3.35 16 16 C 0.06 1.10 5.23 -3.84 -0.02 1.08 16 17 N -0.54 -9.85 4.75 -234.93 -1.12 -10.97 16 18 C 0.02 0.33 9.06 60.06 0.54 0.87 16 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.64 6.32 -51.93 -0.33 0.31 16 22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.36 9.21 6.92 -39.29 -0.27 8.94 16 25 H 0.29 6.37 5.61 -39.29 -0.22 6.15 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 29 H 0.05 1.02 8.09 -51.92 -0.42 0.60 16 30 H 0.02 0.40 6.83 -51.93 -0.35 0.05 16 31 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.07 0.88 6.20 -51.93 -0.32 0.55 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 248.17 15.07 3.74 3.74 Total: -1.00 -27.13 248.17 -6.95 -34.08 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.08 Total: 11.31 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 0.00 Total: -10.15 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.58 Total: -55.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.13 -6.95 -34.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.331 kcal (2) G-P(sol) polarization free energy of solvation -27.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds