Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.45947 * 2 1 4 4 C 1.53032 * 109.46482 * 119.96431 * 2 1 3 5 5 C 1.53123 * 109.28121 * 179.19636 * 4 2 1 6 6 N 1.46899 * 109.51980 * 62.31439 * 5 4 2 7 7 C 1.50702 * 109.52474 * 182.44152 * 5 4 2 8 8 H 1.07995 * 119.99724 * 0.02562 * 7 5 4 9 9 C 1.37877 * 119.99892 * 180.02562 * 7 5 4 10 10 N 1.31514 * 119.99907 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00131 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46825 * 89.99699 * 11 9 7 13 13 H 1.48498 * 109.47352 * 210.00130 * 11 9 7 14 14 H 1.48502 * 109.47025 * 330.00319 * 11 9 7 15 15 C 1.53124 * 109.16220 * 302.35028 * 5 4 2 16 16 C 1.53035 * 109.27475 * 57.64849 * 15 5 4 17 17 N 1.46846 * 109.52744 * 300.82106 * 16 15 5 18 18 C 1.46898 * 111.00056 * 185.84176 * 17 16 15 19 19 H 1.09000 * 109.46710 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47188 * 299.97418 * 1 2 3 21 21 H 1.08998 * 109.47175 * 59.98023 * 1 2 3 22 22 H 1.09001 * 109.50949 * 299.14218 * 4 2 1 23 23 H 1.09000 * 109.50361 * 59.25965 * 4 2 1 24 24 H 1.00904 * 111.00032 * 179.97438 * 6 5 4 25 25 H 1.00894 * 111.00114 * 303.95865 * 6 5 4 26 26 H 0.97003 * 119.99721 * 180.02562 * 10 9 7 27 27 H 1.08993 * 109.50112 * 297.71243 * 15 5 4 28 28 H 1.08992 * 109.50394 * 177.58991 * 15 5 4 29 29 H 1.09008 * 109.45841 * 180.80263 * 16 15 5 30 30 H 1.09003 * 109.46290 * 60.84246 * 16 15 5 31 31 H 1.08997 * 109.47063 * 56.04360 * 18 17 16 32 32 H 1.08993 * 109.47414 * 176.04888 * 18 17 16 33 33 H 1.09004 * 109.47400 * 296.04746 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5710 -0.7358 1.2357 6 7 4.0759 0.6430 1.2796 7 6 4.0784 -1.4964 2.4336 8 1 3.3796 -1.9268 3.1356 9 6 5.4348 -1.6427 2.6335 10 7 6.2857 -1.1180 1.7789 11 14 6.0638 -2.5861 4.1180 12 1 6.2124 -4.0211 3.7659 13 1 7.3810 -2.0386 4.5307 14 1 5.0978 -2.4486 5.2375 15 6 4.0549 -1.4186 -0.0466 16 6 3.4865 -0.6777 -1.2590 17 7 2.0193 -0.6918 -1.1993 18 6 1.4373 -0.1108 -2.4165 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5134 0.8902 21 1 -0.3633 0.5141 -0.8898 22 1 1.6895 -0.1979 2.1400 23 1 1.6660 -1.7445 1.2578 24 1 5.0848 0.6591 1.2715 25 1 3.6991 1.1904 0.5205 26 1 7.2399 -1.2213 1.9193 27 1 3.7127 -2.4534 -0.0592 28 1 5.1440 -1.3944 -0.0831 29 1 3.8176 -1.1699 -2.1735 30 1 3.8403 0.3533 -1.2532 31 1 1.8130 -0.6446 -3.2894 32 1 0.3515 -0.1973 -2.3771 33 1 1.7156 0.9408 -2.4862 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084331276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = -19.025413 kcal Electronic energy + Delta-G solvation = -13734.314352 eV Core-core repulsion = 11600.714042 eV Total energy + Delta-G solvation = -2133.600310 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45121 -36.50581 -33.55690 -33.13042 -30.28876 -28.54354 -27.35898 -25.78800 -23.38894 -21.83298 -19.68564 -18.22702 -17.01875 -16.42412 -16.09304 -15.80894 -15.37291 -14.86258 -14.58768 -13.90068 -13.81126 -13.04786 -12.85038 -12.83422 -12.74556 -12.57803 -12.49266 -12.15480 -11.93432 -11.76391 -11.70344 -10.97748 -10.65647 -10.54190 -9.17304 -8.81296 -8.05105 -6.16924 1.41509 1.43603 1.52712 2.45753 3.08919 3.18502 4.10927 4.15713 4.24282 4.38224 4.50444 4.53892 4.68863 4.70012 4.81104 4.89398 4.96513 5.02595 5.10806 5.12187 5.28876 5.37225 5.48229 5.56076 5.72405 6.01677 6.30673 6.34234 6.37899 6.73015 7.13085 7.36283 7.53280 8.97610 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057782 B = 0.011183 C = 0.010325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.460086 B = 2503.235519 C = 2711.216437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.031 0.969 4 C -0.085 4.085 5 C 0.232 3.768 6 N -0.843 5.843 7 C -0.519 4.519 8 H 0.044 0.956 9 C 0.028 3.972 10 N -0.912 5.912 11 Si 0.951 3.049 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.276 1.276 15 C -0.127 4.127 16 C 0.065 3.935 17 N -0.546 5.546 18 C 0.022 3.978 19 H 0.059 0.941 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.345 0.655 25 H 0.301 0.699 26 H 0.261 0.739 27 H 0.027 0.973 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 2.163 -6.363 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.048 0.952 4 C -0.123 4.123 5 C 0.141 3.859 6 N -0.375 5.375 7 C -0.557 4.557 8 H 0.062 0.938 9 C -0.171 4.171 10 N -0.552 5.552 11 Si 0.778 3.222 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.201 1.201 15 C -0.168 4.168 16 C -0.063 4.063 17 N -0.272 5.272 18 C -0.126 4.126 19 H 0.078 0.922 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.161 0.839 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.822 1.744 -5.640 9.800 hybrid contribution 1.464 0.015 -0.100 1.467 sum -6.359 1.758 -5.740 8.745 Atomic orbital electron populations 1.21860 0.92785 1.02427 1.02393 1.21633 0.96277 0.94581 0.90026 0.95155 1.21531 0.96278 0.98807 0.95699 1.18408 0.90390 0.85564 0.91566 1.59334 1.14982 1.13730 1.49428 1.21396 0.91831 1.33039 1.09476 0.93799 1.25560 0.97096 0.96012 0.98446 1.69726 1.02140 1.46495 1.36866 0.85680 0.77460 0.78699 0.80391 1.20503 1.20945 1.20079 1.22155 1.00986 0.98039 0.95607 1.22057 0.87494 0.97888 0.98907 1.61953 1.06887 1.55473 1.02875 1.22490 1.01226 0.97049 0.91831 0.92224 0.91728 0.90982 0.93306 0.93532 0.83940 0.88741 0.92961 0.95383 0.91654 0.91243 0.96357 0.91047 0.89610 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.76 71.98 0.63 -3.12 16 2 C 0.08 2.92 2.21 44.94 0.10 3.02 16 3 H 0.03 1.11 6.64 -2.38 -0.02 1.10 16 4 C -0.08 -3.65 4.30 30.65 0.13 -3.52 16 5 C 0.23 11.44 0.64 2.86 0.00 11.45 16 6 N -0.84 -40.82 8.77 -154.19 -1.35 -42.17 16 7 C -0.52 -28.86 8.22 25.60 0.21 -28.65 16 8 H 0.04 2.48 7.74 -2.91 -0.02 2.45 16 9 C 0.03 1.53 5.21 84.65 0.44 1.97 16 10 N -0.91 -50.25 9.58 21.45 0.21 -50.05 16 11 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 C -0.13 -6.07 4.80 30.65 0.15 -5.92 16 16 C 0.06 2.49 5.23 86.33 0.45 2.95 16 17 N -0.55 -18.84 4.75 -897.19 -4.26 -23.10 16 18 C 0.02 0.56 9.06 127.69 1.16 1.72 16 19 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 20 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.07 1.63 6.32 -2.39 -0.02 1.61 16 22 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.34 18.05 6.92 -89.69 -0.62 17.43 16 25 H 0.30 13.14 5.61 -89.70 -0.50 12.63 16 26 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 3.45 6.18 -2.39 -0.01 3.44 16 29 H 0.07 2.47 8.09 -2.38 -0.02 2.45 16 30 H 0.02 0.71 6.83 -2.39 -0.02 0.70 16 31 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.09 1.91 6.20 -2.39 -0.01 1.89 16 33 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -57.57 248.17 -0.14 -57.71 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.03 Total: 31.55 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 3.27 Total: -20.11 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -5.41 Total: -115.31 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -57.57 -0.14 -57.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.685 kcal (2) G-P(sol) polarization free energy of solvation -57.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds