Wall clock time and date at job start Mon Mar 30 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46857 * 2 1 4 4 H 1.08999 * 109.47211 * 56.29411 * 3 2 1 5 5 C 1.50698 * 109.46942 * 176.29934 * 3 2 1 6 6 H 1.07994 * 120.00468 * 120.00453 * 5 3 2 7 7 C 1.37881 * 119.99723 * 299.99425 * 5 3 2 8 8 N 1.31519 * 119.99880 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00003 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46749 * 60.00482 * 9 7 5 11 11 H 1.48495 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47333 * 300.00598 * 9 7 5 13 13 N 1.46903 * 109.47225 * 296.29666 * 3 2 1 14 14 C 1.46902 * 111.00128 * 294.00892 * 13 3 2 15 15 C 1.46898 * 111.00081 * 170.05551 * 13 3 2 16 16 C 1.53509 * 114.17426 * 179.49512 * 15 13 3 17 17 N 1.47473 * 87.93562 * 139.67189 * 16 15 13 18 18 C 1.47483 * 87.83683 * 332.98962 * 17 16 15 19 19 H 1.09003 * 109.47264 * 175.27849 * 1 2 3 20 20 H 1.09002 * 109.47366 * 295.27788 * 1 2 3 21 21 H 1.08996 * 109.47053 * 55.28234 * 1 2 3 22 22 H 1.08994 * 109.46820 * 240.00096 * 2 1 3 23 23 H 1.09000 * 109.47059 * 120.00146 * 2 1 3 24 24 H 0.97000 * 119.99334 * 179.97438 * 8 7 5 25 25 H 1.08993 * 109.46902 * 296.05022 * 14 13 3 26 26 H 1.09002 * 109.46795 * 56.04650 * 14 13 3 27 27 H 1.08994 * 109.47265 * 176.04249 * 14 13 3 28 28 H 1.09000 * 113.25719 * 46.54444 * 15 13 3 29 29 H 1.09005 * 113.47403 * 24.90484 * 16 15 13 30 30 H 1.08998 * 113.53275 * 254.44974 * 16 15 13 31 31 H 1.00896 * 111.00077 * 84.68208 * 17 16 15 32 32 H 1.09005 * 113.47396 * 141.77203 * 18 17 16 33 33 H 1.09000 * 113.48034 * 272.24251 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6234 1.9751 0.8549 5 6 3.5442 1.4435 0.0917 6 1 4.1328 1.8940 -0.6937 7 6 4.1689 0.8694 1.1785 8 7 3.4521 0.3205 2.1349 9 14 6.0335 0.8700 1.2919 10 1 6.5289 2.2699 1.2916 11 1 6.4533 0.1962 2.5469 12 1 6.6005 0.1439 0.1273 13 7 1.6247 2.1087 -1.2417 14 6 2.2817 1.5046 -2.4084 15 6 1.8882 3.5525 -1.1780 16 6 1.4917 4.3204 -2.4467 17 7 0.9848 5.3952 -1.5735 18 6 0.7577 4.3702 -0.5377 19 1 -0.3634 -1.0242 -0.0846 20 1 -0.3634 0.4388 0.9293 21 1 -0.3633 0.5853 -0.8447 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.8917 -0.0837 2.8993 25 1 3.3583 1.6606 -2.3404 26 1 2.0703 0.4355 -2.4314 27 1 1.9040 1.9692 -3.3192 28 1 2.8836 3.7922 -0.8040 29 1 0.7112 3.8275 -3.0265 30 1 2.3431 4.6219 -3.0569 31 1 1.7275 6.0229 -1.3043 32 1 0.9879 4.7136 0.4709 33 1 -0.2186 3.8906 -0.6079 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085258305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:23 Heat of formation + Delta-G solvation = 38.898442 kcal Electronic energy + Delta-G solvation = -13505.078324 eV Core-core repulsion = 11373.989780 eV Total energy + Delta-G solvation = -2131.088544 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.39943 -36.14845 -32.43688 -31.01272 -26.95767 -26.39497 -25.16881 -23.87143 -22.32935 -19.58190 -18.96560 -16.31787 -16.04243 -15.48428 -14.59618 -13.84397 -13.44628 -12.91121 -12.77290 -12.30715 -11.99168 -11.82359 -11.57538 -11.37063 -11.11595 -10.82170 -10.76350 -10.54997 -10.11451 -9.80935 -9.63626 -9.51480 -9.12702 -8.38996 -8.27013 -7.18121 -6.01931 -4.15529 3.24057 3.29982 3.31953 4.35860 4.59492 5.00708 5.11613 5.23138 5.51722 5.89055 6.10165 6.17536 6.18298 6.27395 6.32653 6.37652 6.47113 6.57967 6.68623 6.70498 6.77442 7.11185 7.18009 7.34661 7.57495 7.61330 7.74176 7.94837 8.13449 8.29450 8.44890 8.94495 9.51885 10.97310 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031551 B = 0.013042 C = 0.010911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.234562 B = 2146.443569 C = 2565.624819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.525 5.525 14 C 0.034 3.966 15 C 0.022 3.978 16 C 0.017 3.983 17 N -0.656 5.656 18 C 0.027 3.973 19 H 0.025 0.975 20 H 0.037 0.963 21 H 0.050 0.950 22 H 0.032 0.968 23 H 0.091 0.909 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.329 0.671 32 H 0.061 0.939 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 3.682 -5.232 6.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.249 5.249 14 C -0.115 4.115 15 C -0.089 4.089 16 C -0.113 4.113 17 N -0.282 5.282 18 C -0.103 4.103 19 H 0.044 0.956 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.724 3.798 -5.404 7.582 hybrid contribution 3.039 -0.331 0.662 3.128 sum -0.685 3.467 -4.741 5.913 Atomic orbital electron populations 1.21727 0.98848 0.98533 1.00594 1.21586 0.92242 0.99128 1.01914 1.19251 0.92727 0.91135 0.86248 0.94508 1.21695 0.92826 1.38012 1.05893 0.92745 1.24908 0.97835 0.95036 0.95592 1.69867 1.34977 1.37763 1.09628 0.86750 0.86245 0.78153 0.77399 1.20457 1.21179 1.20343 1.62752 1.56515 1.00535 1.05078 1.22141 0.97276 0.99608 0.92435 1.24437 0.97864 0.91000 0.95561 1.23667 0.99158 0.92221 0.96267 1.65626 1.39663 1.12107 1.10760 1.23567 1.00191 0.91564 0.95021 0.95620 0.94335 0.93104 0.94896 0.89073 0.92809 0.95332 0.91999 0.94134 0.90996 0.88463 0.92455 0.85741 0.92007 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.85 37.16 0.37 -2.47 16 2 C -0.11 -2.59 5.13 -26.73 -0.14 -2.73 16 3 C 0.21 5.14 1.72 -68.87 -0.12 5.02 16 4 H 0.04 0.99 8.08 -51.93 -0.42 0.57 16 5 C -0.55 -14.33 7.02 -34.44 -0.24 -14.57 16 6 H 0.05 1.44 6.03 -52.49 -0.32 1.12 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.61 11.30 55.43 0.63 -23.98 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -10.79 4.02 -227.97 -0.92 -11.71 16 14 C 0.03 0.66 8.67 60.07 0.52 1.18 16 15 C 0.02 0.42 3.27 -67.50 -0.22 0.20 16 16 C 0.02 0.27 7.19 -7.55 -0.05 0.22 16 17 N -0.66 -10.18 8.76 -122.67 -1.07 -11.26 16 18 C 0.03 0.46 8.43 -7.54 -0.06 0.40 16 19 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.99 7.58 -51.93 -0.39 0.60 16 22 H 0.03 0.76 6.31 -51.93 -0.33 0.43 16 23 H 0.09 2.40 5.98 -51.93 -0.31 2.09 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.03 0.59 6.28 -51.93 -0.33 0.26 16 26 H 0.06 1.21 6.23 -51.93 -0.32 0.89 16 27 H 0.04 0.67 7.05 -51.93 -0.37 0.31 16 28 H 0.07 1.50 7.25 -51.93 -0.38 1.13 16 29 H 0.10 1.55 7.86 -51.93 -0.41 1.14 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.33 4.60 8.85 -39.29 -0.35 4.25 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -26.85 258.04 -7.71 -34.55 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.16 Total: 3.61 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.04 Total: -11.00 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -1.36 Total: -46.95 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.85 -7.71 -34.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085258305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.453 kcal (2) G-P(sol) polarization free energy of solvation -26.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds