Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46884 * 2 1 4 4 N 1.46902 * 109.47266 * 119.99974 * 2 1 3 5 5 C 1.46904 * 110.99724 * 310.90258 * 4 2 1 6 6 C 1.50700 * 109.47064 * 287.28803 * 5 4 2 7 7 H 1.08001 * 119.99886 * 354.61141 * 6 5 4 8 8 C 1.37875 * 120.00258 * 174.60909 * 6 5 4 9 9 N 1.31522 * 119.99882 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00394 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46938 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47506 * 119.99839 * 10 8 6 13 13 H 1.48503 * 109.47128 * 240.00258 * 10 8 6 14 14 C 1.46895 * 110.99736 * 74.85152 * 4 2 1 15 15 C 1.53939 * 113.73636 * 271.72761 * 14 4 2 16 16 N 1.47958 * 86.18291 * 221.92325 * 15 14 4 17 17 C 1.47964 * 90.76395 * 24.69120 * 16 15 14 18 18 H 1.09003 * 109.47216 * 299.99852 * 1 2 3 19 19 H 1.09005 * 109.47417 * 59.99559 * 1 2 3 20 20 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47052 * 240.00158 * 2 1 3 22 22 H 1.09006 * 109.46622 * 172.06295 * 3 2 1 23 23 H 1.08997 * 109.47070 * 292.06201 * 3 2 1 24 24 H 1.08992 * 109.47034 * 52.06740 * 3 2 1 25 25 H 1.08994 * 109.47701 * 47.28882 * 5 4 2 26 26 H 1.09001 * 109.47130 * 167.29439 * 5 4 2 27 27 H 0.96996 * 119.99984 * 179.97438 * 9 8 6 28 28 H 1.09000 * 112.94051 * 43.43936 * 14 4 2 29 29 H 1.09003 * 113.75618 * 336.24395 * 15 14 4 30 30 H 1.08998 * 113.75889 * 107.60369 * 15 14 4 31 31 H 1.00901 * 111.00093 * 137.57787 * 16 15 14 32 32 H 1.09001 * 113.76027 * 220.99490 * 17 16 15 33 33 H 1.08997 * 113.85989 * 89.63659 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3485 -0.1926 2.4068 6 6 1.8609 1.1869 2.7317 7 1 2.6710 1.6112 2.1570 8 6 1.2956 1.9073 3.7624 9 7 0.3094 1.3904 4.4624 10 14 1.9302 3.6175 4.1646 11 1 3.0364 3.9658 3.2371 12 1 0.8290 4.6022 4.0144 13 1 2.4305 3.6437 5.5626 14 6 1.8572 -2.1468 1.0708 15 6 0.4899 -2.6627 1.5545 16 7 1.2406 -3.7770 2.1743 17 6 2.4613 -2.9436 2.2413 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 3.1207 1.4458 0.1419 23 1 1.7971 1.9138 -0.9524 24 1 1.5654 1.9957 0.8105 25 1 0.2733 -0.1492 2.2333 26 1 1.5552 -0.8627 3.2413 27 1 -0.0880 1.8970 5.1878 28 1 2.1472 -2.5214 0.0891 29 1 0.0030 -2.0064 2.2758 30 1 -0.1723 -2.9749 0.7470 31 1 0.8899 -3.9794 3.0985 32 1 3.3742 -3.4801 1.9825 33 1 2.5527 -2.3688 3.1629 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = 45.864914 kcal Electronic energy + Delta-G solvation = -13640.898525 eV Core-core repulsion = 11510.112071 eV Total energy + Delta-G solvation = -2130.786455 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.61997 -36.13570 -32.58891 -30.27561 -27.63199 -26.59140 -25.26399 -24.80430 -22.61288 -19.38294 -18.18661 -16.92947 -16.02129 -15.25960 -14.44248 -14.36933 -13.62098 -13.21964 -12.49362 -12.40921 -12.18841 -11.88279 -11.32325 -11.25557 -11.14250 -10.96617 -10.71095 -10.45577 -10.35733 -10.16315 -9.79521 -9.42731 -9.03961 -8.49488 -8.38584 -7.17022 -6.05141 -4.02195 3.28347 3.36870 3.41106 4.38401 4.55612 4.87243 5.26205 5.29163 5.50332 5.76219 5.84877 5.92086 5.94928 6.08026 6.21101 6.23760 6.33852 6.42311 6.48178 6.57468 6.71147 6.77955 6.97169 7.21718 7.40787 7.47573 7.59933 7.83801 8.12355 8.21652 8.55762 9.03880 9.58631 11.05410 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036585 B = 0.012718 C = 0.010879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.151012 B = 2200.990654 C = 2573.186601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.095 3.905 3 C -0.147 4.147 4 N -0.524 5.524 5 C 0.181 3.819 6 C -0.501 4.501 7 H 0.074 0.926 8 C 0.052 3.948 9 N -0.900 5.900 10 Si 0.891 3.109 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.064 3.936 15 C -0.034 4.034 16 N -0.642 5.642 17 C 0.010 3.990 18 H 0.078 0.922 19 H 0.044 0.956 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.029 0.971 24 H 0.095 0.905 25 H 0.014 0.986 26 H 0.022 0.978 27 H 0.259 0.741 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.313 0.687 32 H 0.079 0.921 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -3.905 -5.800 7.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.014 4.014 3 C -0.205 4.205 4 N -0.247 5.247 5 C 0.056 3.944 6 C -0.540 4.540 7 H 0.092 0.908 8 C -0.148 4.148 9 N -0.541 5.541 10 Si 0.720 3.280 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.047 4.047 15 C -0.166 4.166 16 N -0.266 5.266 17 C -0.120 4.120 18 H 0.096 0.904 19 H 0.063 0.937 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.114 0.886 25 H 0.032 0.968 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.376 -4.343 -6.222 7.712 hybrid contribution -0.836 1.352 1.036 1.898 sum 0.540 -2.991 -5.186 6.011 Atomic orbital electron populations 1.22560 0.98470 1.01019 1.02433 1.21374 0.92215 0.95738 0.92066 1.22214 1.01493 0.95759 1.00995 1.62309 1.57747 1.00501 1.04124 1.19961 0.93211 0.95413 0.85785 1.21446 1.17741 0.99913 1.14885 0.90758 1.24989 0.95257 0.98322 0.96266 1.69958 1.24978 1.37772 1.21350 0.86533 0.78816 0.84398 0.78299 1.19536 1.21181 1.21145 1.23523 0.93197 0.89805 0.98182 1.24574 0.98660 0.93182 1.00189 1.66815 1.05004 1.31406 1.23393 1.23893 0.94648 0.94031 0.99471 0.90369 0.93703 0.93642 0.92778 0.92962 0.95206 0.88625 0.96846 0.96047 0.93088 0.88909 0.89979 0.90849 0.87482 0.90227 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 8.14 37.16 0.30 -3.11 16 2 C 0.09 1.80 2.90 -67.71 -0.20 1.60 16 3 C -0.15 -2.85 7.80 37.16 0.29 -2.56 16 4 N -0.52 -10.88 4.60 -221.53 -1.02 -11.90 16 5 C 0.18 4.39 2.92 -4.97 -0.01 4.37 16 6 C -0.50 -13.25 6.77 -34.44 -0.23 -13.49 16 7 H 0.07 1.96 5.65 -52.49 -0.30 1.66 16 8 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 9 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 10 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.06 1.16 3.89 -69.39 -0.27 0.89 16 15 C -0.03 -0.60 6.32 -2.77 -0.02 -0.62 16 16 N -0.64 -10.72 8.53 -117.13 -1.00 -11.72 16 17 C 0.01 0.18 8.33 -2.76 -0.02 0.15 16 18 H 0.08 1.67 6.05 -51.93 -0.31 1.36 16 19 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.04 0.78 5.87 -51.93 -0.30 0.48 16 21 H 0.05 0.94 7.85 -51.93 -0.41 0.53 16 22 H 0.05 1.02 7.80 -51.93 -0.40 0.62 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.10 2.12 5.39 -51.93 -0.28 1.84 16 25 H 0.01 0.36 4.42 -51.93 -0.23 0.13 16 26 H 0.02 0.56 5.79 -51.93 -0.30 0.26 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.09 1.59 7.90 -51.93 -0.41 1.18 16 29 H 0.08 1.64 5.77 -51.93 -0.30 1.34 16 30 H 0.07 1.21 7.64 -51.93 -0.40 0.82 16 31 H 0.31 4.92 8.91 -39.29 -0.35 4.57 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.51 6.39 -51.93 -0.33 1.18 16 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -27.39 247.98 -7.55 -34.94 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.73 Total: 5.35 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.26 Total: -11.43 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -1.28 Total: -48.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.39 -7.55 -34.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.806 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds