Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46884 * 2 1 4 4 N 1.46902 * 109.47266 * 119.99974 * 2 1 3 5 5 C 1.46904 * 110.99724 * 310.90258 * 4 2 1 6 6 C 1.50700 * 109.47064 * 287.28803 * 5 4 2 7 7 H 1.08001 * 119.99886 * 354.61141 * 6 5 4 8 8 C 1.37875 * 120.00258 * 174.60909 * 6 5 4 9 9 N 1.31522 * 119.99882 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00394 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46938 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47506 * 119.99839 * 10 8 6 13 13 H 1.48503 * 109.47128 * 240.00258 * 10 8 6 14 14 C 1.46895 * 110.99736 * 74.85152 * 4 2 1 15 15 C 1.53939 * 113.73636 * 271.72761 * 14 4 2 16 16 N 1.47958 * 86.18291 * 221.92325 * 15 14 4 17 17 C 1.47964 * 90.76395 * 24.69120 * 16 15 14 18 18 H 1.09003 * 109.47216 * 299.99852 * 1 2 3 19 19 H 1.09005 * 109.47417 * 59.99559 * 1 2 3 20 20 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47052 * 240.00158 * 2 1 3 22 22 H 1.09006 * 109.46622 * 172.06295 * 3 2 1 23 23 H 1.08997 * 109.47070 * 292.06201 * 3 2 1 24 24 H 1.08992 * 109.47034 * 52.06740 * 3 2 1 25 25 H 1.08994 * 109.47701 * 47.28882 * 5 4 2 26 26 H 1.09001 * 109.47130 * 167.29439 * 5 4 2 27 27 H 0.96996 * 119.99984 * 179.97438 * 9 8 6 28 28 H 1.09000 * 112.94051 * 43.43936 * 14 4 2 29 29 H 1.09003 * 113.75618 * 336.24395 * 15 14 4 30 30 H 1.08998 * 113.75889 * 107.60369 * 15 14 4 31 31 H 1.00901 * 111.00093 * 137.57787 * 16 15 14 32 32 H 1.09001 * 113.76027 * 220.99490 * 17 16 15 33 33 H 1.08997 * 113.85989 * 89.63659 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3485 -0.1926 2.4068 6 6 1.8609 1.1869 2.7317 7 1 2.6710 1.6112 2.1570 8 6 1.2956 1.9073 3.7624 9 7 0.3094 1.3904 4.4624 10 14 1.9302 3.6175 4.1646 11 1 3.0364 3.9658 3.2371 12 1 0.8290 4.6022 4.0144 13 1 2.4305 3.6437 5.5626 14 6 1.8572 -2.1468 1.0708 15 6 0.4899 -2.6627 1.5545 16 7 1.2406 -3.7770 2.1743 17 6 2.4613 -2.9436 2.2413 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 3.1207 1.4458 0.1419 23 1 1.7971 1.9138 -0.9524 24 1 1.5654 1.9957 0.8105 25 1 0.2733 -0.1492 2.2333 26 1 1.5552 -0.8627 3.2413 27 1 -0.0880 1.8970 5.1878 28 1 2.1472 -2.5214 0.0891 29 1 0.0030 -2.0064 2.2758 30 1 -0.1723 -2.9749 0.7470 31 1 0.8899 -3.9794 3.0985 32 1 3.3742 -3.4801 1.9825 33 1 2.5527 -2.3688 3.1629 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086432389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = 24.866550 kcal Electronic energy + Delta-G solvation = -13641.809083 eV Core-core repulsion = 11510.112071 eV Total energy + Delta-G solvation = -2131.697012 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.12840 -37.69331 -34.62055 -31.87252 -29.50673 -28.12903 -26.70927 -26.37487 -24.49602 -20.89733 -19.78744 -18.74492 -17.69558 -16.87739 -16.34306 -15.94408 -15.10561 -14.79363 -14.21237 -14.00253 -13.89200 -13.45864 -13.02386 -12.95718 -12.79311 -12.55908 -12.50459 -12.19271 -12.03047 -11.67761 -11.39550 -11.16617 -10.88568 -10.48075 -9.93026 -8.84643 -8.13152 -6.15778 1.39960 1.42716 1.54066 2.43129 3.07109 3.19472 3.39148 3.80054 4.01213 4.27194 4.41250 4.43765 4.47280 4.60072 4.78780 4.84050 4.88381 4.94473 5.01227 5.05415 5.19807 5.24279 5.31187 5.40530 5.63295 5.76594 5.82070 6.18335 6.22502 6.49410 6.75446 6.98075 7.48921 8.97153 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036585 B = 0.012718 C = 0.010879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.151012 B = 2200.990654 C = 2573.186601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.089 3.911 3 C -0.142 4.142 4 N -0.533 5.533 5 C 0.201 3.799 6 C -0.504 4.504 7 H 0.074 0.926 8 C 0.001 3.999 9 N -0.937 5.937 10 Si 0.952 3.048 11 H -0.262 1.262 12 H -0.283 1.283 13 H -0.285 1.285 14 C 0.061 3.939 15 C -0.027 4.027 16 N -0.631 5.631 17 C 0.012 3.988 18 H 0.039 0.961 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.083 0.917 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.062 0.938 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.259 0.741 28 H 0.116 0.884 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.320 0.680 32 H 0.100 0.900 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -4.117 -7.420 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.019 4.019 3 C -0.200 4.200 4 N -0.255 5.255 5 C 0.075 3.925 6 C -0.542 4.542 7 H 0.092 0.908 8 C -0.196 4.196 9 N -0.579 5.579 10 Si 0.779 3.221 11 H -0.186 1.186 12 H -0.209 1.209 13 H -0.211 1.211 14 C -0.049 4.049 15 C -0.160 4.160 16 N -0.256 5.256 17 C -0.119 4.119 18 H 0.058 0.942 19 H 0.087 0.913 20 H 0.073 0.927 21 H 0.101 0.899 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.071 -4.562 -7.857 9.318 hybrid contribution -1.042 1.365 1.487 2.272 sum 1.029 -3.197 -6.370 7.201 Atomic orbital electron populations 1.22423 0.98035 1.01369 1.01612 1.21535 0.92589 0.95634 0.92118 1.22093 1.00662 0.95930 1.01281 1.62219 1.57454 1.02241 1.03614 1.19560 0.92248 0.94039 0.86630 1.21764 1.17228 1.00843 1.14392 0.90821 1.25748 0.95565 1.01921 0.96398 1.70080 1.26429 1.39256 1.22103 0.85572 0.78432 0.80178 0.77954 1.18573 1.20899 1.21143 1.23694 0.93549 0.88215 0.99454 1.24409 0.98607 0.93023 0.99920 1.66832 1.04487 1.30428 1.23804 1.23836 0.95784 0.94058 0.98173 0.94234 0.91315 0.92742 0.89866 0.93568 0.92251 0.91965 0.98661 0.98645 0.93201 0.86624 0.92974 0.89183 0.86819 0.88135 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.18 8.14 71.98 0.59 -5.59 16 2 C 0.09 3.21 2.90 44.92 0.13 3.34 16 3 C -0.14 -5.27 7.80 71.98 0.56 -4.71 16 4 N -0.53 -21.64 4.60 -854.78 -3.93 -25.57 16 5 C 0.20 9.95 2.92 85.56 0.25 10.20 16 6 C -0.50 -27.02 6.77 25.60 0.17 -26.85 16 7 H 0.07 3.89 5.65 -2.91 -0.02 3.87 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.94 -55.06 13.29 21.45 0.28 -54.78 16 10 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 14 C 0.06 2.11 3.89 46.48 0.18 2.29 16 15 C -0.03 -0.94 6.32 86.41 0.55 -0.39 16 16 N -0.63 -20.14 8.53 -524.49 -4.47 -24.62 16 17 C 0.01 0.41 8.33 86.41 0.72 1.13 16 18 H 0.04 1.70 6.05 -2.39 -0.01 1.68 16 19 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 20 H 0.05 1.78 5.87 -2.39 -0.01 1.76 16 21 H 0.08 2.56 7.85 -2.39 -0.02 2.54 16 22 H 0.05 1.73 7.80 -2.38 -0.02 1.71 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 2.73 5.39 -2.39 -0.01 2.72 16 25 H 0.00 -0.22 4.42 -2.39 -0.01 -0.23 16 26 H 0.00 -0.24 5.79 -2.39 -0.01 -0.25 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.12 3.53 7.90 -2.39 -0.02 3.51 16 29 H 0.05 2.13 5.77 -2.39 -0.01 2.11 16 30 H 0.09 2.78 7.64 -2.39 -0.02 2.77 16 31 H 0.32 9.78 8.91 -89.69 -0.80 8.98 16 32 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.05 2.05 6.39 -2.39 -0.02 2.04 16 Total: -1.00 -58.58 247.98 -2.18 -60.75 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.31 Total: 18.59 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 3.61 Total: -20.09 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -8.12 Total: -104.96 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -58.58 -2.18 -60.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.620 kcal (2) G-P(sol) polarization free energy of solvation -58.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds