Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47217 * 2 1 4 4 H 1.08995 * 109.47442 * 54.42094 * 3 2 1 5 5 C 1.50704 * 109.47165 * 174.42070 * 3 2 1 6 6 H 1.07995 * 120.00479 * 119.99869 * 5 3 2 7 7 C 1.37882 * 119.99799 * 299.99638 * 5 3 2 8 8 N 1.31518 * 120.00188 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47084 * 60.00097 * 9 7 5 11 11 H 1.48504 * 109.47164 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47009 * 299.99918 * 9 7 5 13 13 N 1.46901 * 109.47092 * 294.41652 * 3 2 1 14 14 C 1.46899 * 110.99951 * 152.88133 * 13 3 2 15 15 H 1.08996 * 110.27520 * 326.85272 * 14 13 3 16 16 C 1.54595 * 110.30491 * 204.65884 * 14 13 3 17 17 C 1.54943 * 102.91774 * 219.12792 * 16 14 13 18 18 N 1.48525 * 103.22915 * 37.41223 * 17 16 14 19 19 C 1.47903 * 105.82169 * 320.79856 * 18 17 16 20 20 H 1.09000 * 109.47431 * 296.01822 * 1 2 3 21 21 H 1.09008 * 109.47078 * 56.01697 * 1 2 3 22 22 H 1.09001 * 109.47168 * 176.01845 * 1 2 3 23 23 H 1.09007 * 109.46728 * 119.99604 * 2 1 3 24 24 H 1.09002 * 109.47406 * 239.99712 * 2 1 3 25 25 H 0.97001 * 120.00168 * 179.97438 * 8 7 5 26 26 H 1.00894 * 110.99600 * 28.92702 * 13 3 2 27 27 H 1.08999 * 110.72652 * 337.48089 * 16 14 13 28 28 H 1.09003 * 110.72732 * 100.77351 * 16 14 13 29 29 H 1.09006 * 110.66479 * 278.97643 * 17 16 14 30 30 H 1.09005 * 110.80953 * 155.92245 * 17 16 14 31 31 H 1.00899 * 111.00482 * 200.27989 * 18 17 16 32 32 H 1.09001 * 109.91275 * 265.97302 * 19 18 17 33 33 H 1.08997 * 110.08173 * 144.77890 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8358 5 6 3.5407 1.4447 0.1381 6 1 4.1534 1.8866 -0.6336 7 6 4.1314 0.8826 1.2500 8 7 3.3854 0.3440 2.1896 9 14 5.9915 0.8860 1.4215 10 1 6.4860 2.2861 1.4218 11 1 6.3722 0.2268 2.6967 12 1 6.5950 0.1481 0.2829 13 7 1.6634 2.0950 -1.2611 14 6 1.5340 3.5475 -1.0842 15 1 1.1665 3.7749 -0.0835 16 6 0.5848 4.1358 -2.1533 17 6 1.2697 5.4749 -2.5254 18 7 2.7161 5.1396 -2.4853 19 6 2.8890 4.2381 -1.3255 20 1 -0.3634 0.4508 0.9235 21 1 -0.3634 0.5745 -0.8522 22 1 -0.3633 -1.0252 -0.0714 23 1 1.8932 -0.5138 0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 3.8010 -0.0518 2.9716 26 1 0.8134 1.6989 -1.6334 27 1 0.5263 3.4784 -3.0208 28 1 -0.4058 4.3126 -1.7343 29 1 1.0329 6.2451 -1.7914 30 1 0.9765 5.7951 -3.5253 31 1 3.2776 5.9717 -2.3834 32 1 3.1735 4.8154 -0.4458 33 1 3.6530 3.4916 -1.5424 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086729857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = -22.429790 kcal Electronic energy + Delta-G solvation = -13254.463141 eV Core-core repulsion = 11120.715206 eV Total energy + Delta-G solvation = -2133.747935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72356 -37.25402 -34.19967 -32.66071 -30.41160 -28.78688 -27.60564 -24.57192 -22.49663 -21.23965 -21.14758 -18.44870 -17.58149 -16.87689 -16.61030 -15.60861 -15.13679 -14.73303 -14.37529 -14.02173 -13.74189 -13.24589 -13.04878 -12.97194 -12.71428 -12.63047 -12.42097 -12.20623 -11.83916 -11.76017 -11.50432 -11.24628 -10.92764 -10.40579 -9.39175 -9.02352 -8.04772 -6.15425 1.41465 1.42796 1.50355 2.44644 3.19837 3.41910 3.59990 3.85874 3.96436 4.39209 4.43248 4.50640 4.57134 4.69615 4.70252 4.79015 4.97569 4.99094 5.09353 5.13628 5.23461 5.32342 5.39455 5.63585 5.78006 5.89776 5.94192 6.39233 6.50475 6.57366 6.98305 7.03157 7.53037 8.98397 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030748 B = 0.012538 C = 0.009335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.418588 B = 2232.732050 C = 2998.791115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.224 3.776 4 H -0.033 1.033 5 C -0.504 4.504 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.083 3.917 15 H 0.022 0.978 16 C -0.121 4.121 17 C 0.043 3.957 18 N -0.677 5.677 19 C 0.058 3.942 20 H 0.035 0.965 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.036 0.964 25 H 0.259 0.741 26 H 0.330 0.670 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.342 0.658 32 H 0.023 0.977 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 6.938 -6.316 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.116 3.884 4 H -0.016 1.016 5 C -0.542 4.542 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.028 4.028 15 H 0.040 0.960 16 C -0.159 4.159 17 C -0.086 4.086 18 N -0.307 5.307 19 C -0.072 4.072 20 H 0.054 0.946 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.149 0.851 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.041 0.959 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.717 6.366 -6.894 10.502 hybrid contribution 0.251 0.429 1.907 1.971 sum -4.466 6.795 -4.987 9.538 Atomic orbital electron populations 1.21750 0.96244 1.01283 1.00339 1.21622 0.94287 0.99093 1.01207 1.19011 0.94221 0.90648 0.84505 1.01572 1.21503 0.92708 1.36041 1.03988 0.92813 1.25672 1.02003 0.95559 0.95763 1.69996 1.36149 1.40147 1.09928 0.85712 0.81188 0.78193 0.77125 1.20031 1.21059 1.19920 1.60682 1.37955 1.02215 1.30013 1.22270 0.94901 0.89273 0.96404 0.96043 1.22724 0.97812 0.97061 0.98285 1.23037 0.87875 0.95774 1.01952 1.63066 1.07143 1.18753 1.41696 1.22582 0.98459 0.95428 0.90721 0.94556 0.92472 0.92227 0.91401 0.94520 0.93206 0.85060 0.90187 0.89758 0.93338 0.88282 0.84250 0.95902 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.81 71.98 0.71 -4.51 16 2 C -0.12 -5.88 5.35 30.59 0.16 -5.72 16 3 C 0.22 11.38 2.03 44.17 0.09 11.47 16 4 H -0.03 -1.88 7.39 -2.39 -0.02 -1.90 16 5 C -0.50 -28.20 8.15 25.60 0.21 -28.00 16 6 H 0.05 3.06 6.16 -2.91 -0.02 3.04 16 7 C 0.01 0.43 5.29 84.66 0.45 0.88 16 8 N -0.92 -53.61 11.29 21.45 0.24 -53.37 16 9 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.68 -28.87 6.02 -468.83 -2.82 -31.69 16 14 C 0.08 3.14 3.32 45.79 0.15 3.30 16 15 H 0.02 0.90 7.42 -2.39 -0.02 0.88 16 16 C -0.12 -3.40 6.51 31.80 0.21 -3.19 16 17 C 0.04 1.06 7.55 86.65 0.65 1.72 16 18 N -0.68 -20.60 7.51 -502.21 -3.77 -24.37 16 19 C 0.06 2.23 6.84 86.44 0.59 2.82 16 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.06 1.88 6.36 -2.38 -0.02 1.87 16 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 3.69 5.94 -2.38 -0.01 3.67 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.33 12.55 6.06 -89.70 -0.54 12.01 16 27 H 0.08 2.27 7.96 -2.39 -0.02 2.25 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.34 8.79 8.92 -89.69 -0.80 7.99 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 3.08 6.05 -2.39 -0.01 3.06 16 Total: -1.00 -61.33 258.08 -1.35 -62.68 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.24 Total: 21.12 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.22 Total: -21.23 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -6.35 Total: -109.44 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -61.33 -1.35 -62.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086729857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.249 kcal (2) G-P(sol) polarization free energy of solvation -61.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds